View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_2 (Length: 829)
Name: NF18072_low_2
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 12 - 744
Target Start/End: Complemental strand, 31054770 - 31054038
Alignment:
| Q |
12 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
111 |
Q |
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| T |
31054770 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
31054671 |
T |
|
| Q |
112 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtttgtaagcatagctttgaaagtg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31054670 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtctgtaagcatagctttgaaagtg |
31054571 |
T |
|
| Q |
212 |
taaatagcatacttttgttggaaaatattgaagtatgataaatgtaagagtggatctacatgatgtgcctgtgtaaatgtgtgttaaggcttgaaaatag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31054570 |
taaatagcatacttttgttggaaaatattgaagtatgataaatgtatgagtgcatctacatgatgtgcctgtgtaaatgtgtgttaaggcttgaaaatag |
31054471 |
T |
|
| Q |
312 |
attatatcaatatatgctctaaatctcaagatgatcaaatcaaaatacctcacgctcggtaataggatgatgacaagagtgacaccgaaagcagtctgga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31054470 |
attatatcaatatatgctctaaatctcaagatgatcaaatcaaaatacctcacgctcggtaataggatgatgacaagagtgacaccgaaagcagtctgga |
31054371 |
T |
|
| Q |
412 |
tgaaaataactatgttcgactcccaaacaattaccgtagagtatctccttgttgcaccctccacatattctgttatgcgatggcatgctgcatattatca |
511 |
Q |
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| T |
31054370 |
tgaaaataactatgttcgactcccaaacaattaccgtagagtatctccttgttgcaccctccacatattctgttatgcgatggcatgctgcatattatca |
31054271 |
T |
|
| Q |
512 |
gttgtaaataagtgatgaagaaaaaccgtcagatattgatttattggaacacgtaagcatcagaacaatgaaacaaaaacaaaaactaactacataatgt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31054270 |
gttgtaaataagtgatgaagaaaaaccgtcagatattgatttattggaacacgtaagcatcagaacaatgaaacaaaaacaaaaactaactacataatgt |
31054171 |
T |
|
| Q |
612 |
atgttaaagcgagtcaatagagaaatctaaggttatttcaaaactctgttcaaattaatacttgataaattatagtgttacaacacacgtacatacatgc |
711 |
Q |
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| T |
31054170 |
atgttaaagcgagtcaatagagaaatctaaggttatttcaaaactctgttcaaattaatacttgataaattatagtgttacaacacacgtacatacatgc |
31054071 |
T |
|
| Q |
712 |
ataatgtaagagaaatcttgaattatatgatgt |
744 |
Q |
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| T |
31054070 |
gtaatgtaagagaaatcttgaattatatgatgt |
31054038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 755 - 814
Target Start/End: Complemental strand, 31053971 - 31053912
Alignment:
| Q |
755 |
gcaaaatttacctgtatccgcggggataaaaaggtataggggcgcatggagggtgtagag |
814 |
Q |
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| T |
31053971 |
gcaaaatttacctgtatccgcggggataaaaaggtataggggcgcatggagggtgtagag |
31053912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 34744012 - 34744107
Alignment:
| Q |
49 |
gcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccctgacaaagaaaacttggatcaacagaaacaaaa |
144 |
Q |
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| T |
34744012 |
gcaaacttcacattttgggtgagtcaactctttaaaacaagatttgtgatatggatgcttccctgacaaagaaaacttggatcaacaaaaaaaaaa |
34744107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 420
Target Start/End: Original strand, 34744173 - 34744243
Alignment:
| Q |
350 |
atcaaaatacctcacgctcggtaataggatgatgacaagagtgacaccgaaagcagtctggatgaaaataa |
420 |
Q |
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|||||| |||||| ||||||||||| ||| | |||||||||| || |||||||||||||||||||||||| |
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| T |
34744173 |
atcaaactacctcgcgctcggtaatgggagaacgacaagagtggcatcgaaagcagtctggatgaaaataa |
34744243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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