View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18072_low_20 (Length: 271)
Name: NF18072_low_20
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_20 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 30091784 - 30091916
Alignment:
| Q |
1 |
cctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacctgaagtccgaagcagacaactcgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30091784 |
cctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacctgaagtccgaagcagacagctcgat |
30091883 |
T |
|
| Q |
101 |
tagtaagctgagagttacagaaggagtactaac |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30091884 |
tagtaagctgagagttacagaaggagtactaac |
30091916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 30091944 - 30092038
Alignment:
| Q |
177 |
gttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatca |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30091944 |
gttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatca |
30092038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 30087806 - 30087958
Alignment:
| Q |
3 |
tagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacctgaagtccgaagcagacaactcgatta |
102 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
30087806 |
tagcttttggtgcaatgcctcttgctactcctttagcatagccaaaataagaagctccgttgacatagttacctgaagtccgaagcaaacaactcgat-a |
30087904 |
T |
|
| Q |
103 |
gtaagctgagagttacagaaggagtactaaccaagaaactaacataatttgctaacatttgtctat |
168 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
30087905 |
gtaagctgagagt------------actaaccaagaaactaacataatttgttactatttgtctat |
30087958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 30098922 - 30098828
Alignment:
| Q |
177 |
gttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatca |
271 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
30098922 |
gttacctgcaacagttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatca |
30098828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 30087983 - 30088061
Alignment:
| Q |
177 |
gttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacattt |
255 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
30087983 |
gttacctgcaacagttgatgatgtatgagttccatgtccgatactgtctctagctgagttcttgctgattccaacattt |
30088061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 30099129 - 30098998
Alignment:
| Q |
1 |
cctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacct-gaagtccgaagcagacaactcga |
99 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| |||| | ||||||||| |||| |
|
|
| T |
30099129 |
cctagcttttggtgcaatgcctcttgctattcctttggcataaccaaaataagaagctccattaacatagttacctacaagttcaaagcagacagttcga |
30099030 |
T |
|
| Q |
100 |
ttagtaagctgagagttacagaaggagtacta |
131 |
Q |
| |
|
|| ||||||| |||| || ||| |||||||| |
|
|
| T |
30099029 |
ttggtaagctcagagacaccgaatgagtacta |
30098998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 35171617 - 35171667
Alignment:
| Q |
221 |
tgtctctagctgagttcatcctgattctaacatttggatttgaagcaatca |
271 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||| ||||| ||||||| |
|
|
| T |
35171617 |
tgtctctagctgagttcatactgattttgacatttggttttgatgcaatca |
35171667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University