View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_3 (Length: 675)
Name: NF18072_low_3
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 15345214 - 15345538
Alignment:
| Q |
9 |
aggcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacg |
108 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
15345214 |
aggcacaaacgcaaatataaaccctaaaaaccttatgtatggaacatgaatcaggagttagcgctgaagaaggtaacagaacttacaagaattgaaaacg |
15345313 |
T |
|
| Q |
109 |
gagaattggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctc |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15345314 |
gagaattggagaagaacatagagtttggaggccgtcgagagcgaacgtgacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctc |
15345413 |
T |
|
| Q |
209 |
accctactgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaataa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |
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| T |
15345414 |
cccctactgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccggcgaaaaactagaacagggggagagagaaactggactgaataa |
15345513 |
T |
|
| Q |
307 |
tgaaggagaggatagaagcacaatt |
331 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15345514 |
tgaaggagaggatagaagcacaatt |
15345538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 396 - 662
Target Start/End: Original strand, 15345849 - 15346111
Alignment:
| Q |
396 |
ttaaatatatgcttatgtatgtaatataactacatattatcctatttttgtatacaattatgaatttttcttaatctattaaaagaaaactcagaaccaa |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15345849 |
ttaaatatatgcttatgtatgtaatataactacatattatcctatttttgtatacaattatgaatttttcttaatctattaaaagaaaactcagaaccaa |
15345948 |
T |
|
| Q |
496 |
gtgaacaaatagatggcttactaattaaaagttttaaacattaaatgtcaagaacaaaatttcaatgagattaattgtagctcaatcgcaattactcaaa |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15345949 |
gtgaacaaatagatggcttactaattaaaagttttaaacattaaatgtcaagaacaaaatttcaatgag----attgtagctcaatcgcaattactcaaa |
15346044 |
T |
|
| Q |
596 |
tctttttagacttgattatcccatcagccacacgtccccatcaattttatttatttatgttttccct |
662 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15346045 |
tctttttagacttgattatcccatcagccacacgtccccatcaattttatttatttatgttttccct |
15346111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 395 - 659
Target Start/End: Original strand, 15366482 - 15366741
Alignment:
| Q |
395 |
tttaaatatatgcttatgtatgtaatataactacatattatcctatttttgtatacaattatgaatttttcttaatctattaaaagaaaactcagaacca |
494 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15366482 |
tttaaatatatgcttacgtatgtaatataactacatattatcctatttttgtatacaattatgaattttccttaatctattaaaagaaaactcagaacca |
15366581 |
T |
|
| Q |
495 |
agtgaacaaatagatggcttactaattaaaagttttaaacattaaatgtcaagaacaaaatttcaatgagattaattgtagctcaatcgcaattactcaa |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| | |
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| T |
15366582 |
agtgaacaaatagatggcttactaattaaaagttttaaacattaaatgtcaagaacaaaatttcaatgag----attgtacctcaatggcaattactc-a |
15366676 |
T |
|
| Q |
595 |
atctttttagacttgattatcccatcagccacacgtccccatcaattttatttatttatgttttc |
659 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15366677 |
atctttttagacttgattatcccatcagccacatgtccccatcaattttatttatttatgttttc |
15366741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 15345592 - 15345658
Alignment:
| Q |
338 |
caactaagagtggtatggggtgtttgtccacgtaagttggtcgacgtatcagaactctttaaatata |
404 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15345592 |
caactaatagtggtatggggtgtttgtccacgtaagttggtcgacgtatcagaactctttaaatata |
15345658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 40504233 - 40504557
Alignment:
| Q |
9 |
aggcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
40504233 |
aggcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaacttacaagaatcgaaaatg |
40504332 |
T |
|
| Q |
109 |
gagaattggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctc |
208 |
Q |
| |
|
||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40504333 |
gagaattggagaagaacggtgagtttgaaggctgtcgagagcgaacgagacgtgatacaaagagagatagagagtcgcgagcatcaataacccctttctc |
40504432 |
T |
|
| Q |
209 |
accctactgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaataa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |
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| T |
40504433 |
accctactgaattgattgaagaaggtaaagtgattgaatgcaaaattcttctcgccggcgaaaaactagaacagggggagagagaaactggactgaataa |
40504532 |
T |
|
| Q |
307 |
tgaaggagaggatagaagcacaatt |
331 |
Q |
| |
|
|||| ||||||| |||||||||||| |
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| T |
40504533 |
tgaacgagaggaaagaagcacaatt |
40504557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 40504607 - 40504663
Alignment:
| Q |
338 |
caactaagagtggtatggggtgtttgtccacgtaagttggtcgacgtatcagaactc |
394 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
40504607 |
caactatgagtggtatggggtgtttgtccacataagttggtggacgtatcagaactc |
40504663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 24706256 - 24705937
Alignment:
| Q |
11 |
gcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacgga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |
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| T |
24706256 |
gcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacaaaacttacaagaatcgaaaacaga |
24706157 |
T |
|
| Q |
111 |
gaattggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcac |
210 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
24706156 |
gaattggagaagaacagagagtttgaaggccgtcgagagcgaacgagacgtgagacaaagagagatagagagtcgcgagcatcaataacccctttttcac |
24706057 |
T |
|
| Q |
211 |
cctactgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaataatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| |||| |||| ||||||||||| |||| |
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|
| T |
24706056 |
cctactgaattgattgaagaaggtaaagtgattgatggcaaaattcttctcgccggcaaaaaactagaacagggggagagagaaactggactg---aatg |
24705960 |
T |
|
| Q |
309 |
aaggagaggatagaagcacaatt |
331 |
Q |
| |
|
|| ||||||| |||||||||||| |
|
|
| T |
24705959 |
aacgagaggaaagaagcacaatt |
24705937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 24705882 - 24705826
Alignment:
| Q |
338 |
caactaagagtggtatggggtgtttgtccacgtaagttggtcgacgtatcagaactc |
394 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
24705882 |
caactaagagtggcatggggtgtttgtccacataaggtggtcgacgtatcataactc |
24705826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 22107977 - 22107721
Alignment:
| Q |
5 |
acataggcacaaacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaa |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |
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|
| T |
22107977 |
acataggcacaaacacaaatataaaccctaataaccttttgtatggaatatgaatcaggagttagcgttgaagaaggtgacataacttacaagaatcgaa |
22107878 |
T |
|
| Q |
105 |
aacggagaattggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctt |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
22107877 |
aacggagaattggagaagaacaaagagtttgaaggccgacgagagcgaacgagacgtgagacaaaaagagata---------gagcatcaataacccctt |
22107787 |
T |
|
| Q |
205 |
tctcaccctactgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
22107786 |
tctcaccctactgaattgattgaagaaggtaaagtgattgaaggcgaaattcttctcgccggcgaa |
22107721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 42495402 - 42495311
Alignment:
| Q |
467 |
taatctattaaaagaaaactcagaaccaagtgaacaaatagatggcttactaattaaaagttttaaacattaaatgtcaagaacaaaatttcaatg |
562 |
Q |
| |
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||||| |||||||| ||||||| |||||| |||||||| || || ||||||||||||||| | | || ||| |||||||||||||||||||| |
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| T |
42495402 |
taatcaattaaaagcaaactcataaccaactgaacaaacag----ctcactaattaaaagtttgacatttttaatatcaagaacaaaatttcaatg |
42495311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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