View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18072_low_4 (Length: 596)
Name: NF18072_low_4
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 40515802 - 40516363
Alignment:
| Q |
18 |
gattaaaggccacgtgtagaaccaggggttctctacattctgtccctttccttgtagtaaagcaattccgcattcctcggcttttatcagtggcttagga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40515802 |
gattaaaggccacgtgtagaaccaggggttctctacattctgtccctttccttgtagtaaagcaattccgcattcctcggcttttatcagtggcttagga |
40515901 |
T |
|
| Q |
118 |
tttcgtacacctgcaatatagccaaatgtataaatgaccttaataaatagcaagacaatggaatggggccaaaagggaaagnnnnnnngaaggggaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
40515902 |
tttcgtacacctgcaatatagccaaatgtataaatgaccttaataaatagcaagacaatggaatggggccaaaaggaaaagaaaaaaagaaggggaaaat |
40516001 |
T |
|
| Q |
218 |
gcatctctctctgtactcactgtaataatataaacaataataattaatctgtatcataagcagcaacaaaagcctgaacactgttattttttagtagttt |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40516002 |
gcatctctctctgtactcactttaataatataaacaataataattaatctgtatcataagcagcaacaaaagcctgaacactgttattttttagt---tt |
40516098 |
T |
|
| Q |
318 |
cttatatgtgaatagtaaaaagttgattattctagcagccccagccccacatataaccctttctctataaaatagctgacctatcaaatccgtactaagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40516099 |
cttatatgtgaatagtaaaaagttgattattctagcagccccagccccacatataaccctttctctataaaatagctgacctatcaaatccgtactaagt |
40516198 |
T |
|
| Q |
418 |
tactgtcttaccctatctctgttctgttctgttctcttgtgtaagtccaaacttcaatgttacgaatgaatgggctaatctgagactgtaactttggttt |
517 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40516199 |
tactgtcttatcctatctctgttctgttctgttctcttgtgtaagtccaaacttcaatgttgcgaatgaatgggctaatctgagactgtaactttggttt |
40516298 |
T |
|
| Q |
518 |
agtatacgttgtttgtttttcccattgttgggctctatgctgtatctatatcctaatcctatcct |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40516299 |
agtatacgttgtttgtttttcccattgttgggctctatgctgtatctatatcctaatcctatcct |
40516363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University