View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_5 (Length: 505)
Name: NF18072_low_5
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2624317 - 2623980
Alignment:
| Q |
1 |
tatgcttgaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaatatattatgt |
100 |
Q |
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| T |
2624317 |
tatgcttgaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaatacattatgt |
2624218 |
T |
|
| Q |
101 |
tatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttctccaaaagac |
200 |
Q |
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| T |
2624217 |
tatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttctccaaaagac |
2624118 |
T |
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| Q |
201 |
taaactagagaacaagtttatgaatgctcgtacaataacaagactattttctctgaggactcgtgatatgtcagagaggaaaccaacac-gttgtctgca |
299 |
Q |
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| T |
2624117 |
taaactagagaacaagtttatgaatgctcgtacaataacaagactattttctctgaggactcgtgatatgtcagagaggaaaccaacactgttgtctgca |
2624018 |
T |
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| Q |
300 |
ctcaactctagtttaacactctgcatgttagaaacaag |
337 |
Q |
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| T |
2624017 |
ctcaactctagtttaacactctgcatgttagaaacaag |
2623980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 491
Target Start/End: Complemental strand, 2623941 - 2623825
Alignment:
| Q |
377 |
gaccaatttaatggttagaaactgtttgaaattttcaagggagcctgcggatcattaccttggac--cnnnnnnnncaatcatacatgtgagttaggatg |
474 |
Q |
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| T |
2623941 |
gaccaatttaatggttagaaactgtttgaaattttcaagggagcctgccgattattaccttggacaaaaaaaaaaaaaatcatacaagtgagttaggatg |
2623842 |
T |
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| Q |
475 |
tcacatcttcacccata |
491 |
Q |
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| T |
2623841 |
tcacatcttcacccata |
2623825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 6186185 - 6186267
Alignment:
| Q |
88 |
aaatatattatgttatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattga |
170 |
Q |
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| T |
6186185 |
aaatatattatgttatcgatgatgatttcgggcccatatcaaccaggtaacgacatagatgtttatctaagtccattgattga |
6186267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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