View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_6 (Length: 469)
Name: NF18072_low_6
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 38821861 - 38822308
Alignment:
| Q |
17 |
atgtacatcatagtgcaatattttcatctcaatataatttctttgtttgactttgtaaatataataaatatgcatcttagaagaatattccaattgacat |
116 |
Q |
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| T |
38821861 |
atgtacatcatagtgcaatattttcatctcaatataatttctttgtttgactttgtaaatataataaatatgcatcttagaagaatattccaattgacat |
38821960 |
T |
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| Q |
117 |
caataacaaagatttcaaaattaaaaaagccaccaaagttctatttcagtatctaagaaccatgacgtaagacaatatggataaactgttgaagttcaat |
216 |
Q |
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| T |
38821961 |
caataacaaagattgcaaaatttaaaaagccaccaaagttctatttcagtatctaagaaccatgacgtaagacaatatggataaactgttgaagttcaat |
38822060 |
T |
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| Q |
217 |
gtttcaccttcctacctgaagatactatcaaccatgtgatgaatttcat---ataataagattgtattataatgtcttggtcctttaatcaattaataat |
313 |
Q |
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| T |
38822061 |
gtttcaccttcctacctgaagatactatcaaccacgtgatgaatttcatataataataagattgtattataatgtcttggtcctttaatcaattaataat |
38822160 |
T |
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| Q |
314 |
cttatcgttagtacttgactaaacggaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaataacctctgga |
413 |
Q |
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| T |
38822161 |
cttatcgttagtacttgactaaacggaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaataacctctgga |
38822260 |
T |
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| Q |
414 |
tgcatgatccttctgacctcatagtctgtgtcgttagaattatctacc |
461 |
Q |
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| T |
38822261 |
tgcatgatccttctgacctcatagtctgtgtcgttagaaatatatacc |
38822308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 38808960 - 38809033
Alignment:
| Q |
80 |
ataaatatgcatcttagaagaatattccaattgacatcaataacaaagatttcaaaattaaaaaagccaccaaa |
153 |
Q |
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| T |
38808960 |
ataaatatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagccatcaaa |
38809033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 38809150 - 38809213
Alignment:
| Q |
339 |
gaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaat |
403 |
Q |
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| T |
38809150 |
gaccattagtttagacaaacaagtggcaccggtaggacaaatggtt-atttttctatatccaaat |
38809213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 38809270 - 38809318
Alignment:
| Q |
413 |
atgcatgatccttctgacctcatagtctgtgtcgttagaattatctacc |
461 |
Q |
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| T |
38809270 |
atgcatgatccttctgacctcataatctgtctcgttagaactatatacc |
38809318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 35521768 - 35521716
Alignment:
| Q |
98 |
agaatattccaattgacatcaataacaaagatttcaaaattaaaaaagccacc |
150 |
Q |
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| T |
35521768 |
agaatattccaattgacattgatagcaaatatttcaaaatcaaaaaagacacc |
35521716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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