View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_7 (Length: 458)
Name: NF18072_low_7
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 49 - 277
Target Start/End: Complemental strand, 22219338 - 22219110
Alignment:
| Q |
49 |
gcactatgatcccttggattaattatgtaaggtagatgagtagtttcatgagattggattagttaaaattttgtagtgaatgatccttatgttatgaatt |
148 |
Q |
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| T |
22219338 |
gcactatgatcacttgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatg |
22219239 |
T |
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| Q |
149 |
catgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcggccatgtacactctttctttctaaaaggtttgctctcttgtttg |
248 |
Q |
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| T |
22219238 |
catgggccaaaacataccgagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctcttgtttg |
22219139 |
T |
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| Q |
249 |
aaaacctcaagggtgaagattggtaatat |
277 |
Q |
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| T |
22219138 |
aaaacctcaagtgtgaagattcgtaatat |
22219110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 22219053 - 22218992
Alignment:
| Q |
274 |
atatgtctatcattacctattagtgctgtttttagcttgtgtgtcttgtgttgatgtagtac |
335 |
Q |
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| T |
22219053 |
atatgtctatcattacctattagtgctgtttttagcttgtgtgtcttgtgttgatctagtac |
22218992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 33103407 - 33103309
Alignment:
| Q |
47 |
atgcactat-gatcccttggattaattatgtaaggtagatgagtagtttcatgagattggattagttaaaattttgtagtgaatgatccttatgttatga |
145 |
Q |
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| T |
33103407 |
atgcactatcgatcacttggattaattatgtaagctagatgactaattt---gagattagattaattaaacttttgtagtgaatgatccttatgtgatga |
33103311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 33125896 - 33125804
Alignment:
| Q |
116 |
attttgtagtgaatgatccttatgttatgaattcatgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcggcca |
208 |
Q |
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| T |
33125896 |
attttgtagtcaatgatccatttgtgctgaattcatgggccaagacattcccagagaacaagcatgtcaagttccttgctgatggttctgcca |
33125804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 431
Target Start/End: Complemental strand, 22218997 - 22218955
Alignment:
| Q |
389 |
tagtactttaattttatagttatatctgagttattagattgaa |
431 |
Q |
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| T |
22218997 |
tagtactttaattttatagttatatctgagttgttatattgaa |
22218955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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