View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18073_high_1 (Length: 632)

Name: NF18073_high_1
Description: NF18073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18073_high_1
NF18073_high_1
[»] chr2 (1 HSPs)
chr2 (11-618)||(7805604-7806230)


Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 618
Target Start/End: Original strand, 7805604 - 7806230
Alignment:
Q  11 caaaggcaacctattacaaatatttcatgaccacacatatagtgttgataaaaacccggatttggacacatcaatctctatagaattcatcaaaacgaat 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  7805604 caaaggcaacctattacaaatatttcatgaccacacatagagtgttgataaaaacccggatttggacacatcaacctgtatagaattcatcaaaacgaat 7805703  T
Q  111 acgagcagtcaaaacttcattgtcatcatttgttatagaaggtggcattgcatttacgaccaaatcatgcgagctatgcttcgcttcttttggaataaaa 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805704 acgagcagtcaaaacttcattgtcataatttgttatagaaggtggcattgcatttacgaccaaatcatgcgagctatgcttcgcttcttttggaataaaa 7805803  T
Q  211 tctgcaaagtagtattgatcaatgttaatagcatcagcagatctacacatcactccattctcatcatctagaaaatgaatttggttgactttcctcatta 310  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805804 tctgcaaagtagtattgagcaatgttaatagcatcagcagatctacacatcactccattctcatcatctagaaaatgaatttggttgactttcctcatta 7805903  T
Q  311 gaagttgcagccacat-------------------atcatctttgtcttcagaacatatcatcttttactagtagcgtagcagtatgtttcttcaatgca 391  Q
    ||||||||||||||||                   |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7805904 gaagttgcagccacatgaaagaatattgtattcgaatcacctttgtcttcagaacatatcatcttttactagtagagtagcaatatgtttcttcaatgca 7806003  T
Q  392 ttaaaataattcacatttgatgcatctacctgagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctttacttcactggtgcatgtttc 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  7806004 ttaaaataattcacatttgatgcatctacctgagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctttacttcattgctgcatgtttc 7806103  T
Q  492 atgcacaattatgaagcttggatataatttgtcttcacaagaagatttccagcaattacagataaagtgatcaaaattaggctcgactaattaaccaaac 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7806104 atgcacaattatgaagcttggatataatttgtcttcacaagaagatttccagcaattacagataaagtgatcaaaattaggctcgactaattaaccaaac 7806203  T
Q  592 attttcttttgactggggatgatatct 618  Q
    |||||||||||||||| | ||||||||    
T  7806204 attttcttttgactggagctgatatct 7806230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University