View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18073_high_6 (Length: 265)
Name: NF18073_high_6
Description: NF18073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18073_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 34674678 - 34674426
Alignment:
| Q |
1 |
catttcgcgtagctattttctatcattttaaatcttttttgaaaaattcaagtccatttaagtttcttgcgagttattttttggcatttacgatattgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674678 |
catttcgcgtagctattttctatcattttaaatcttttttgaaaaattcaagtccatttaagtttcttgcgagttattttttggcatttacgatattgtc |
34674579 |
T |
|
| Q |
101 |
tttaattttccagcaactttggtcatgttctagcatcagtgtgcatcctttaagattatatcctcacaagacttgcatgcctgtttcgagtcaagacgca |
200 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674578 |
tttaattttccagcaactttgttcatgttctagcatcagtgtgcatcctttaagattatatcctcacaagacttgcatgcctgtttcgagtcaagacgca |
34674479 |
T |
|
| Q |
201 |
ctcacacacacctaaattcgtctaggttaccaattaactcgtccaagatccta |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674478 |
ctcacacacacctaaattcgtctaggttaccaattaactcgtccaagatccta |
34674426 |
T |
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