View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18073_low_2 (Length: 440)
Name: NF18073_low_2
Description: NF18073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18073_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 2152843 - 2153265
Alignment:
| Q |
18 |
gtacgcacatacgaatttacggttcataacatgtcaaacgaattatgtaattatggtctaatttacgagccaaatttgtataagttccctgagcttagag |
117 |
Q |
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| T |
2152843 |
gtacgcacatacgaatttacagttcataacatgtcaaatgaattatgtaattatggtctagtttacgagccaaatttgtataagttcccggagcttagag |
2152942 |
T |
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| Q |
118 |
actaatcttaattgtgaaaaataagattggactaagtataaaaccttaatgcctaatccaatcttatttgtgtttacaagccacccaagagatagtcaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2152943 |
actaatcttaattgtgaaaaataagattggactaagtataaaaccttaatgcctaatccaatcttatttgtgtttacaagccatccaagagatagtcaca |
2153042 |
T |
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| Q |
218 |
tgtagtgagccttctcgtcgtcgagggaatcacacacacctttcatgcattatgagaaggattgtggtgctgtgtcacatttcttttctgttttcataac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2153043 |
tgtagtgagccttctcgtcgtcgagggaatcacacacacctttcatgcattatgagaaggattgtggtgctgtgtcacatttcttttctgttttcataac |
2153142 |
T |
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| Q |
318 |
aatcccaaccaccctaggtttccggattacaattatatatatccattactaaccttctataaatgtacaactttatcttgcatttaacaaattgtctcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2153143 |
aatcccaaccaccctaggtttccggattacaattatatatatccattactaaccttctataaatgtacaactttatcttgcatttaacaaattgtcacaa |
2153242 |
T |
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| Q |
418 |
attagcttacaattctcaaactc |
440 |
Q |
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|||| |||||||||||||||||| |
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| T |
2153243 |
attaccttacaattctcaaactc |
2153265 |
T |
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