View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18073_low_3 (Length: 356)
Name: NF18073_low_3
Description: NF18073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18073_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 10094913 - 10095078
Alignment:
| Q |
17 |
tcctcccaaattcatagaaacatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaata |
116 |
Q |
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| T |
10094913 |
tcctcccaaattcatagaaacatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaata |
10095012 |
T |
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| Q |
117 |
agcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
182 |
Q |
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| T |
10095013 |
agcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
10095078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 10034547 - 10034714
Alignment:
| Q |
17 |
tcctcccaaattcatagaaacat--ggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaa |
114 |
Q |
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| T |
10034547 |
tcctcccaaattcatagaaacatatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaa |
10034646 |
T |
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| Q |
115 |
taagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
182 |
Q |
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| T |
10034647 |
taagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
10034714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 10095104 - 10095250
Alignment:
| Q |
182 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
281 |
Q |
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| T |
10095104 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgg---aggtatcttgatgaacaaaa |
10095200 |
T |
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| Q |
282 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctatccttga |
334 |
Q |
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| T |
10095201 |
gctttgaagaggtcttct---tcatcctttgaataaaagctttctatccttga |
10095250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 182 - 328
Target Start/End: Original strand, 10034740 - 10034880
Alignment:
| Q |
182 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
281 |
Q |
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| T |
10034740 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgg---aggtatcttgatgaacaaaa |
10034836 |
T |
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| Q |
282 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctat |
328 |
Q |
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| T |
10034837 |
gctttgaagaggtcttct---tcatcctttgaataaaagctttctat |
10034880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 23667478 - 23667393
Alignment:
| Q |
46 |
aattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaa |
131 |
Q |
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| T |
23667478 |
aattgaagcaatctttcctccctcaatattcccatgcatccaaagtttctcattcggggaatgaaacaataagtttttcacaaaaa |
23667393 |
T |
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