View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18073_low_8 (Length: 228)
Name: NF18073_low_8
Description: NF18073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18073_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 34382754 - 34382555
Alignment:
| Q |
9 |
gaagaatatacagtatctccaatcagggttagtgtcatgacattgttatacagtacattttatgaaaaaacatctttgattatttaccaagtctaataat |
108 |
Q |
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| T |
34382754 |
gaagtatatacagtatctccaatcagggttagtgtca---cattgttatacagtacattttatgaaaaaacatctttgattatttaccaagtctaataat |
34382658 |
T |
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| Q |
109 |
gctataaaatgtaaacatttgtataaacaggtatttggtcatgatgtgcaatttgcaccaattggattgcttgacatgtacaattcaggaggagctatag |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34382657 |
gctataaaatgtaaatatttgtataaacaggtatttggtcatgatgtgcaatttgcaccaattggattgcttgacatgtacaattcaggaggagctgtag |
34382558 |
T |
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