View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18074_high_2 (Length: 516)
Name: NF18074_high_2
Description: NF18074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18074_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Original strand, 13488638 - 13489122
Alignment:
| Q |
14 |
gaacatgtctgctatgtcttgaacctctaggtttcttatattatggtctgtacacactgtttgtaattttcttttgtaactgatattgtttattactatt |
113 |
Q |
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| T |
13488638 |
gaacatgtctgctatgtcttgaacctctaggtttcttatattatggtctgtacacactgtttgtagttttcgtttgtaactgatattgtttattactatt |
13488737 |
T |
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| Q |
114 |
gttcgcagttgcaaaagaatgcaagtatttgaattagaaaaaa--gccgctgagaatcataacgtgatgtaaacaagctatagaagcaatccatttgttt |
211 |
Q |
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| T |
13488738 |
gttcgcagttgcaaaagaatgcaagtatttgaattagaaaaaaaggccgctgagaatcataatgtgatataaacaagcta--gaagcaatccatttgttt |
13488835 |
T |
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| Q |
212 |
ttatcccttgttgtttttcgtaacctaccacaccctacgtcaataaatctgtgaaacttctgtttatatgtggtttgtcgatggcttaagacgtgagtga |
311 |
Q |
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| T |
13488836 |
ttatcccttgatgtttttcgtaacctatcacaccctacgtcaataaatctgtgaaacttctgtttatatg--gtttctggatggcttaagacgtgagtga |
13488933 |
T |
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| Q |
312 |
tgatgggatctcagttatcctgttgcttatcaaaagtgcaagcttggggaagttttgattgtttctgttgcgcagtgatagggaaacaaatagccaatct |
411 |
Q |
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| T |
13488934 |
tgatgggatttcagttatcctgttgcttatcaaaagtgcaagcttggggaagttttgattgtttctgttgcgcaatgatagggaaacaaatagccaatct |
13489033 |
T |
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| Q |
412 |
aataattatcaaccaaataaaactaaaatttatttaccccaacaatgagaaattaatacttccgannnnnnnaagatataacatgttgt |
500 |
Q |
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| T |
13489034 |
aataattatcaaccaaataaaactaaaatttatctaccccaacaatgagaaattaatacttccgatttttttaagatataacatgttgt |
13489122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 13484076 - 13484148
Alignment:
| Q |
395 |
aaacaaatagccaatctaataattatcaaccaaataaaactaaaatttatttaccccaacaatgagaaattaa |
467 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
13484076 |
aaacaaacagccaatctaataatcatcaaccaaataaaactaaaatttatctaccccaacaaagagaaattaa |
13484148 |
T |
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