View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18074_low_1 (Length: 535)
Name: NF18074_low_1
Description: NF18074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18074_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 149640 - 150117
Alignment:
| Q |
17 |
atgaattataaggaatttttctttgtatcaagctctcatgccacttcacaataattccatacctcatgtgaacaacataatatggagggagagtgaagga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
149640 |
atgaattataaggaatttttctttgtatcaagctctcatgccacttcacaataattccatacctcatgtgaacaacataatatggag----agtgaagga |
149735 |
T |
|
| Q |
117 |
agaggtgatgataattaattgcatatacaatttaagattaccttataaatgctcctgagcaagggatgtcccatccatctttccatatgacgtatccata |
216 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
149736 |
agaggtgatgataattgattgcatata--------------------aatgctcctgagcaagggatgtcccatccatctttccatatgacgtatccata |
149815 |
T |
|
| Q |
217 |
taatctcatcccacctcatcagacatacgaaagcaaataattattgagctatatttgtgaattggttttatttcatgatggatcaatcatggtcaaaatt |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
149816 |
taatctcatcccacctcatcacacatacgaaagcaaataattattgagctatatttgtgaattggttttatttcatgatggatcgatcatggtcaaaatt |
149915 |
T |
|
| Q |
317 |
gtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatcagtcaacactcattgagtcttttagc-aaca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
149916 |
gtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatcagtcaacactcattgagtcttttagcaaaca |
150015 |
T |
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| Q |
416 |
ataaaagcacacaaccatatatagtatacctgctggtcacaaatattgctcaagtgaagctcactacgattcctatctaccaaccaacaggttcaatatc |
515 |
Q |
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| T |
150016 |
ataaaagcacacaaccatatatagtatac---ctggtcacaaatattgctcaagtgaagctcactacgattcctatctaccaaccaacaggttcaaaatc |
150112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 154777 - 154883
Alignment:
| Q |
48 |
gctctcatgccacttcacaataattccatacctcatgtgaacaacataatatggagggagagtgaaggaagaggtgatgataatt-aattgcatatacaa |
146 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
154777 |
gctctcatgctacttcacaataattccataccgcatgtgaacaacataatat----ggagagtgaaggaagaggtgatgataattgagttgcatatacaa |
154872 |
T |
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| Q |
147 |
tttaagattac |
157 |
Q |
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|| |||||||| |
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| T |
154873 |
ttgaagattac |
154883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 520
Target Start/End: Original strand, 157849 - 158011
Alignment:
| Q |
361 |
ggcagtggtatgaagacttaatatcagtcaacactcattgagtcttttagcaacaataaaagcaca-------caaccatatatagtatacctgctggtc |
453 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || || |||| | || ||||| |
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| T |
157849 |
ggcagtggtatgaagacttaacatcagtcaacactcattgagtctttcagcaacaataaaagcacatacattgcacacaagcatagcacac---ctggtg |
157945 |
T |
|
| Q |
454 |
acaaatattgctcaagtgaagctcactacgattcctatctaccaaccaacaggttcaatatctatgt |
520 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
157946 |
acaactattgctcaagtgaagctcacta-aattcctatctaccaaccaacaggttcagaatctatgt |
158011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 154943 - 155003
Alignment:
| Q |
208 |
gtatccatataatctcatcccacctcatcagacatacgaaagcaaataattattgagctat |
268 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
154943 |
gtatccatataatctcatcccacctcatcagatatacaaaagcaaataattattgagctat |
155003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 48088045 - 48087972
Alignment:
| Q |
281 |
gttttatttcatgatggatcaatcatggtcaaaattgtagtaattagattaattaatttactccgtatagcgcatttggaggcag |
365 |
Q |
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| T |
48088045 |
gttttatttcatgatgg----atcatggtcaaaatt---gtaattag----attaatttactccgtatatcgcatttggaggcag |
48087972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 23691843 - 23691880
Alignment:
| Q |
17 |
atgaattataaggaatttttctttgtatcaagctctca |
54 |
Q |
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||||||| |||||| ||||||||||||||||||||||| |
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| T |
23691843 |
atgaattttaaggattttttctttgtatcaagctctca |
23691880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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