View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18074_low_3 (Length: 432)

Name: NF18074_low_3
Description: NF18074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18074_low_3
NF18074_low_3
[»] chr8 (13 HSPs)
chr8 (49-275)||(42921248-42921474)
chr8 (190-321)||(35179182-35179313)
chr8 (190-321)||(30208221-30208352)
chr8 (191-321)||(5594807-5594936)
chr8 (186-326)||(40719843-40719987)
chr8 (190-275)||(39402026-39402114)
chr8 (190-275)||(42056702-42056787)
chr8 (198-325)||(1162068-1162193)
chr8 (23-72)||(42921210-42921259)
chr8 (216-321)||(31333117-31333221)
chr8 (216-275)||(30362018-30362078)
chr8 (284-325)||(34173539-34173580)
chr8 (284-313)||(34514561-34514590)
[»] chr7 (5 HSPs)
chr7 (216-432)||(40076536-40076753)
chr7 (190-275)||(8541453-8541539)
chr7 (214-321)||(34998576-34998682)
chr7 (214-325)||(46910256-46910361)
chr7 (290-326)||(30783434-30783470)
[»] chr1 (9 HSPs)
chr1 (190-321)||(24241500-24241631)
chr1 (190-321)||(16253051-16253183)
chr1 (190-321)||(41942803-41942933)
chr1 (190-275)||(21356816-21356901)
chr1 (190-275)||(39744169-39744254)
chr1 (216-263)||(34773431-34773478)
chr1 (216-263)||(38746031-38746078)
chr1 (233-275)||(2345035-2345077)
chr1 (214-275)||(8971475-8971537)
[»] chr3 (10 HSPs)
chr3 (186-275)||(22220228-22220318)
chr3 (191-321)||(22831129-22831258)
chr3 (190-275)||(44880276-44880361)
chr3 (214-321)||(2008447-2008553)
chr3 (186-309)||(26466296-26466420)
chr3 (218-275)||(1994850-1994907)
chr3 (284-317)||(26466198-26466231)
chr3 (197-253)||(39056896-39056952)
chr3 (214-275)||(28297721-28297782)
chr3 (288-337)||(28297796-28297845)
[»] chr4 (4 HSPs)
chr4 (216-321)||(47541764-47541868)
chr4 (190-321)||(46550659-46550791)
chr4 (216-325)||(41464754-41464861)
chr4 (194-275)||(42969962-42970043)
[»] chr2 (9 HSPs)
chr2 (210-275)||(3870070-3870135)
chr2 (216-325)||(37721497-37721606)
chr2 (190-275)||(11028801-11028887)
chr2 (190-325)||(36400879-36401013)
chr2 (190-275)||(38879539-38879625)
chr2 (216-275)||(3949317-3949376)
chr2 (287-326)||(29685521-29685560)
chr2 (190-275)||(28734070-28734155)
chr2 (233-275)||(3647484-3647526)
[»] chr5 (9 HSPs)
chr5 (216-321)||(37872156-37872261)
chr5 (190-266)||(23151439-23151515)
chr5 (191-326)||(34849465-34849600)
chr5 (214-275)||(3454297-3454358)
chr5 (186-263)||(33758812-33758889)
chr5 (233-317)||(20524562-20524646)
chr5 (217-275)||(42285218-42285277)
chr5 (233-275)||(30319873-30319915)
chr5 (216-275)||(2976446-2976505)
[»] scaffold0095 (1 HSPs)
scaffold0095 (190-275)||(35388-35476)
[»] chr6 (4 HSPs)
chr6 (216-275)||(2141240-2141300)
chr6 (216-263)||(7080203-7080250)
chr6 (233-262)||(25336928-25336957)
chr6 (284-317)||(26606207-26606240)
[»] scaffold0288 (2 HSPs)
scaffold0288 (186-247)||(18084-18145)
scaffold0288 (284-317)||(18009-18042)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 49 - 275
Target Start/End: Original strand, 42921248 - 42921474
Alignment:
Q  49 atagaaataggaataggaataggatgagtgataaggtctgtgagacctaaaagtttatttatgagacaggatctcattatagatcatgcatgttcctgag 148  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42921248 ataggaataggaatagcaataggatgagtgataaggtctgtgagacctaaaagtttatttatgagacaggatctcattatagatcatgcatgttcctaag 42921347  T
Q  149 gcacgagtatttatgaacattaacttatactttgaatagatcaaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatc 248  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  42921348 gcacgagtatttatgaacattaacttatactttgaatagaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatc 42921447  T
Q  249 ttttttatcaatttcttccttattatt 275  Q
    ||||||||||||||| |||||||||||    
T  42921448 ttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 35179182 - 35179313
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatca-tcttttttatcaatttcttccttattattnnnnnnnntactt 288  Q
    ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| | | ||||||||||||||| | |||||||||        |||||    
T  35179182 caaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatttccttcttattatt-aaaaaaatactt 35179280  T
Q  289 ttttatgtgtgtgtgaccaaacactttttcttt 321  Q
     |||||| |||||||||||||||||||||||||    
T  35179281 ctttatgcgtgtgtgaccaaacactttttcttt 35179313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 30208221 - 30208352
Alignment:
Q  190 caaattaataatgtttgaatacagata--taaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntact 287  Q
    ||||| ||||||||||| | ||| |||  |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||         |||    
T  30208221 caaatcaataatgtttggacacatatacataaaaagattctcctcaaa-tattcaatcatcttttttatcaatttcctccttattattaaaaaaac-act 30208318  T
Q  288 tttttatgtgtgtgtgaccaaacactttttcttt 321  Q
    | ||||||||||||||||||||||||||||||||    
T  30208319 tctttatgtgtgtgtgaccaaacactttttcttt 30208352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 5594807 - 5594936
Alignment:
Q  191 aaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntactttt 290  Q
    |||| |||||| |||| | ||| | ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||        ||||| |    
T  5594807 aaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcactttcctccttattatt-aaaaaaatacttct 5594905  T
Q  291 ttatgtgtgtgtgaccaaacactttttcttt 321  Q
    |||| |||||||||| |||||||||||||||    
T  5594906 ttatatgtgtgtgactaaacactttttcttt 5594936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 40719987 - 40719843
Alignment:
Q  186 agatcaaattaataatgtttg--aatacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattattnnnnnnn 282  Q
    |||| ||||||||||||||||   | ||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||           
T  40719987 agattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcctccttattatt-taaaaa 40719889  T
Q  283 ntacttttttatgtgtg--tgtgaccaaacactttttctttagtca 326  Q
     ||||| ||||||||||  |||||||||||||||||||||| ||||    
T  40719888 atacttctttatgtgtgtatgtgaccaaacactttttctttggtca 40719843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 39402114 - 39402026
Alignment:
Q  190 caaattaataatgtttgaa--tacagatataaaaagattcttctcaaaatattcaatcatctt-ttttatcaatttcttccttattatt 275  Q
    ||||| |||||| ||||||  |||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  39402114 caaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttctttcttattatt 39402026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 42056702 - 42056787
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||| | ||| | |||||||||||||  | ||||||||||||||||||||||||||||||  |||||||||||    
T  42056702 caaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaattttctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 1162193 - 1162068
Alignment:
Q  198 taatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtg 297  Q
    |||| |||||| ||| | |||||| |||||| |||||||||||||||  ||||| ||||||||||| || ||||||||        || || ||||||||    
T  1162193 taatatttgaacacacacataaaaggattctcctcaaaatattcaatg-tctttcttatcaatttcctctttattattaaaaaaa-tatttctttatgtg 1162096  T
Q  298 tgtgtgaccaaacactttttctttagtc 325  Q
    ||||||||||||||||||||||||||||    
T  1162095 tgtgtgaccaaacactttttctttagtc 1162068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 42921210 - 42921259
Alignment:
Q  23 atgtctatgtatattgtctacataggatagaaataggaataggaatagga 72  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  42921210 atgtctatgtatattgtctacagaggataggaataggaataggaatagga 42921259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 31333221 - 31333117
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacacttt 315  Q
    ||||||||||| | || |||||||||||||||||||||||||| |||  |||||||||||        || || |||||||||||||||||||||||| |    
T  31333221 ataaaaagattttacttaaaatattcaatcatcttttttatcagttttctccttattatt-aaaaaaatatttctttatgtgtgtgtgaccaaacactat 31333123  T
Q  316 ttcttt 321  Q
    ||||||    
T  31333122 ttcttt 31333117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 30362078 - 30362018
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt 275  Q
    ||||||| ||||| ||||||||||||||| ||  ||||||||||||||| |||||||||||    
T  30362078 ataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 34173539 - 34173580
Alignment:
Q  284 tacttttttatgtgtgtgtgaccaaacactttttctttagtc 325  Q
    ||||| ||||| |||||||||||||||||||||| |||||||    
T  34173539 tacttgtttatatgtgtgtgaccaaacactttttgtttagtc 34173580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 34514561 - 34514590
Alignment:
Q  284 tacttttttatgtgtgtgtgaccaaacact 313  Q
    ||||||||||||||||||||||||||||||    
T  34514561 tacttttttatgtgtgtgtgaccaaacact 34514590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 216 - 432
Target Start/End: Complemental strand, 40076753 - 40076536
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatctttttt-atcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacactt 314  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||           ||||||||||||||||||||||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattattaaaaaaatattttttttatgtgtgtgtgaccaaacactt 40076654  T
Q  315 tttctttagtcaaatttctctagaaataaataaaccgtgttaatgactactcttgtagattcatcgcacattcttgttaagaatagcatcatgatacttg 414  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  40076653 tttctttagtcaaatttctatataaataaataaaccgtgttaatgactactcttgtaaatccatcgcacattcttgttaagaatagcatcatgatacttg 40076554  T
Q  415 tattgaatttagagcttt 432  Q
    ||||||||||||||||||    
T  40076553 tattgaatttagagcttt 40076536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 8541453 - 8541539
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatca-tcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||||| ||| |  |||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||    
T  8541453 caaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaatttcctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 34998576 - 34998682
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacact 313  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||  |||||||||||        || || |||||||||||||||||||| |||    
T  34998576 atataaaaagattctcctcaaaatattcaatcattatttttatcaattttctccttattatt-aaaaaaatatttctttatgtgtgtgtgaccaaatact 34998674  T
Q  314 ttttcttt 321  Q
    ||||||||    
T  34998675 ttttcttt 34998682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 46910361 - 46910256
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacact 313  Q
    |||||||||||||||||| ||||||||||||||     |||||||||||| |  ||||||||        || |||||||||||| ||||| ||||||||    
T  46910361 atataaaaagattcttcttaaaatattcaatcac----tttatcaatttcctttttattattaaaaaa--tatttttttatgtgtttgtgatcaaacact 46910268  T
Q  314 ttttctttagtc 325  Q
    ||||||||||||    
T  46910267 ttttctttagtc 46910256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 30783470 - 30783434
Alignment:
Q  290 tttatgtgtgtgtgaccaaacactttttctttagtca 326  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  30783470 tttatgtgtgtgtgaccaaacactttttatttggtca 30783434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 24241500 - 24241631
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttt 289  Q
    ||||| ||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||        ||||||    
T  24241500 caaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattattaaaaaaaatacttt 24241599  T
Q  290 tttatgtgtgtgtgaccaaacactttttcttt 321  Q
    |||||||||||||||||||| |||||||||||    
T  24241600 tttatgtgtgtgtgaccaaatactttttcttt 24241631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 16253051 - 16253183
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt-nnnnnnnntactt 288  Q
    ||||| ||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||         |  ||    
T  16253051 caaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattattaaaaaaatattttt 16253150  T
Q  289 ttttatgtgtgtgtgaccaaacactttttcttt 321  Q
    |||||||||||||||||||||||||||||||||    
T  16253151 ttttatgtgtgtgtgaccaaacactttttcttt 16253183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 41942803 - 41942933
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttt 289  Q
    ||||| ||||||||||| | ||| | |||||||||||||  || ||||||||||||||| |||||||||||||| |||||||||||        |||||     
T  41942803 caaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctccttattatt-aaaaaaatacttc 41942901  T
Q  290 tttatgtgtgtgtgaccaaacactttttcttt 321  Q
    ||||||||||| |||||||||||||| |||||    
T  41942902 tttatgtgtgtatgaccaaacactttatcttt 41942933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 21356816 - 21356901
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||| | ||| |||||||||||||||  ||||||||||||||||||||||||||||||||  || ||||||||    
T  21356816 caaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctcattattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 39744254 - 39744169
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||| | ||| |||||||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||    
T  39744254 caaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctccttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 34773478 - 34773431
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttc 263  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  34773478 ataaaaagattctcctcaaaatattcaatcatattttttattaatttc 34773431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 38746078 - 38746031
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttc 263  Q
    ||||| ||||||| |||||||||||||||||||||| || ||||||||    
T  38746078 ataaatagattctcctcaaaatattcaatcatctttgttttcaatttc 38746031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 2345035 - 2345077
Alignment:
Q  233 aaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    |||| |||||||||||||||||||||||||| ||||| |||||    
T  2345035 aaaaaattcaatcatcttttttatcaatttcctccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 8971475 - 8971537
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatc-atcttttttatcaatttcttccttattatt 275  Q
    ||||||||| ||||| ||||||||||| |||| || ||||||||||| ||| |||||||||||    
T  8971475 atataaaaatattctcctcaaaatatttaatcaattttttttatcaagttcctccttattatt 8971537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 22220228 - 22220318
Alignment:
Q  186 agatcaaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt 275  Q
    ||||||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  22220228 agatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctccttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 191 - 321
Target Start/End: Complemental strand, 22831258 - 22831129
Alignment:
Q  191 aaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntactttt 290  Q
    |||| |||||| |||| | ||| | ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||        ||||| |    
T  22831258 aaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcactttcctccttattatt-aaaaaaatacttct 22831160  T
Q  291 ttatgtgtgtgtgaccaaacactttttcttt 321  Q
    |||| |||||||||| |||||||||||||||    
T  22831159 ttatatgtgtgtgactaaacactttttcttt 22831129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 44880276 - 44880361
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||||| ||| | |||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||    
T  44880276 caaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctccttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 2008447 - 2008553
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacact 313  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||        ||||  |||||||||||||| |||||||||    
T  2008447 atataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctccttattatt-aaaaaaatactaatttatgtgtgtgtggccaaacact 2008545  T
Q  314 ttttcttt 321  Q
     |||||||    
T  2008546 atttcttt 2008553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 26466420 - 26466296
Alignment:
Q  186 agatcaaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttt---tatcaatttcttccttattattnnnnnnn 282  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||  | |||||   |||||||||  |||||||||||           
T  26466420 agatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaattgtttttttttatatcaattttctccttattatt--aaaaa 26466323  T
Q  283 ntacttttttatgtgtgtgtgaccaaa 309  Q
     ||||| ||||||||||||||||||||    
T  26466322 atacttctttatgtgtgtgtgaccaaa 26466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 1994907 - 1994850
Alignment:
Q  218 aaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||||||||| || ||||||||||||||||||||||||||||| | || ||||||||    
T  1994907 aaaaagattctcctgaaaatattcaatcatcttttttatcaattacctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 26466231 - 26466198
Alignment:
Q  284 tacttttttatgtgtgtgtgaccaaacacttttt 317  Q
    ||||||||||||||||||||||||||||||||||    
T  26466231 tacttttttatgtgtgtgtgaccaaacacttttt 26466198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 39056952 - 39056896
Alignment:
Q  197 ataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttt 253  Q
    |||||||||| | ||| | ||||||||||| | ||||||||||||||||||||||||    
T  39056952 ataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatcttttt 39056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 28297721 - 28297782
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||||||||||||| || || |||||| ||||| | ||||||||||||| || ||||||||    
T  28297721 atataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 28297796 - 28297845
Alignment:
Q  288 tttttatgtgtgtgtgaccaaacactttttctttagtcaaatttctctag 337  Q
    ||||||||| | |||||||||||||||||||||| ||  |||||||||||    
T  28297796 tttttatgtatctgtgaccaaacactttttctttggtagaatttctctag 28297845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 47541868 - 47541764
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacacttt 315  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||        || |||||||||||||||||||||||||||||    
T  47541868 ataaaaagattttcctcaaaatattcaatcatcttttttatcaatttccttcttattatt-aaaaaaatatttttttatgtgtgtgtgaccaaacacttt 47541770  T
Q  316 ttcttt 321  Q
    ||||||    
T  47541769 ttcttt 47541764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 46550791 - 46550659
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt-nnnnnnnntactt 288  Q
    ||||| |||||||||| || ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||||  || ||||||||         |||||    
T  46550791 caaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatcaattttctctttattattaaaaaaaaatactt 46550692  T
Q  289 ttttatgtgtgtgtgaccaaacactttttcttt 321  Q
     ||||||||||||||||||||||||||||||||    
T  46550691 ctttatgtgtgtgtgaccaaacactttttcttt 46550659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 41464861 - 41464754
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacacttt 315  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||| ||||||||        || || |  ||||||||||||||||||||| |    
T  41464861 ataaaaagattctcttcaaaatactcaatcatcttttttatcaatttcttctttattatt--aaaaaatatttctccatgtgtgtgtgaccaaacactat 41464764  T
Q  316 ttctttagtc 325  Q
    ||||||||||    
T  41464763 ttctttagtc 41464754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 42969962 - 42970043
Alignment:
Q  194 ttaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    |||||| | |||||| |||  |||||||||||| | || ||||||||||||| | ||||||||||||||  || ||||||||    
T  42969962 ttaatagtatttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 3870070 - 3870135
Alignment:
Q  210 acagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3870070 acagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 37721497 - 37721606
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatca-tcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacactt 314  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||||| |||||||||||        || || |||||||||||||||||||||||||    
T  37721497 ataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctccttattatt-aaaaaaataattctttatgtgtgtgtgaccaaacactt 37721595  T
Q  315 tttctttagtc 325  Q
    |||||||||||    
T  37721596 tttctttagtc 37721606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 11028801 - 11028887
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt 275  Q
    ||||| ||||||||||| | ||| | ||||||||||||| || |||||||||||||||| ||||||||||||||| |||||||||||    
T  11028801 caaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctccttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 36400879 - 36401013
Alignment:
Q  190 caaattaataatgtttgaatacagata--taaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntact 287  Q
    ||||| ||||||||||||| ||| | |  |||||||||||| ||||||||||||||||||||||||||||||||   ||  |||||||        ||||    
T  36400879 caaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt--gtctctattatt-aaaaaaatact 36400975  T
Q  288 tttttatgtgtgtgtgaccaaacactttttctttagtc 325  Q
    | |||||||||||||| |||||||||||||||||||||    
T  36400976 tctttatgtgtgtgtgtccaaacactttttctttagtc 36401013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 38879539 - 38879625
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt 275  Q
    ||||||||||||||||| | ||| | ||||||||||||| ||||||||||| ||||||| ||||||||||||||  |||| ||||||    
T  38879539 caaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctcctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 3949376 - 3949317
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    |||||||  |||| |||||||||||||||||| |||||||||||||||||  ||||||||    
T  3949376 ataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 29685521 - 29685560
Alignment:
Q  287 ttttttatgtgtgtgtgaccaaacactttttctttagtca 326  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  29685521 ttttttatgtgtgtgtgaccaaacactttttctttggtca 29685560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 28734155 - 28734070
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatctttttt-atcaatttcttccttattatt 275  Q
    ||||| ||||||||||| | ||| | ||||||| ||||| ||||||||| ||| ||||||||||| |||||||||||| ||||||||    
T  28734155 caaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaatttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 3647484 - 3647526
Alignment:
Q  233 aaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||||||||||||||||||||||||||||  ||||| |||||    
T  3647484 aaaatattcaatcatcttttttatcaattttctccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 37872261 - 37872156
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatctt-ttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacactt 314  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||        || ||||||||||||||||||||||| ||||    
T  37872261 ataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt-aaaaatatatttttttatgtgtgtgtgaccaaatactt 37872163  T
Q  315 tttcttt 321  Q
    |||||||    
T  37872162 tttcttt 37872156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 23151515 - 23151439
Alignment:
Q  190 caaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttc 266  Q
    ||||| ||||||||||| | ||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  23151515 caaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttc 23151439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 326
Target Start/End: Original strand, 34849465 - 34849600
Alignment:
Q  191 aaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt-nnnnnnnntactt 288  Q
    |||| ||||||||||  | ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||||         |||||    
T  34849465 aaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattattaaaaaaaaatactt 34849564  T
Q  289 ttttatgtgtgtgtgaccaaacactttttctttagtca 326  Q
    |||||   ||||||||||||||||||||||||| ||||    
T  34849565 tttta--cgtgtgtgaccaaacactttttctttggtca 34849600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 3454297 - 3454358
Alignment:
Q  214 atataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  3454297 atatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 33758812 - 33758889
Alignment:
Q  186 agatcaaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcatcttttttatcaatttc 263  Q
    ||||||||| |||| |||||| | ||| | ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  33758812 agatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttc 33758889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 20524646 - 20524562
Alignment:
Q  233 aaaatattcaatcatcttttttatcaatttcttccttattattnnnnnnnntacttttttatgtgtgtgtgaccaaacacttttt 317  Q
    ||||||||||||||| ||||||||||||||| || ||||||||        || || ||||||||||||||||||||||||||||    
T  20524646 aaaatattcaatcattttttttatcaatttcctctttattattaaaaaaaatatttctttatgtgtgtgtgaccaaacacttttt 20524562  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  217 taaaaagattcttctcaaaatattcaatca-tcttttttatcaatttcttccttattatt 275  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 30319873 - 30319915
Alignment:
Q  233 aaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  30319873 aaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 2976505 - 2976446
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttcttccttattatt 275  Q
    ||||||||||  | || ||||||||||||||| |||||||||||||||||| ||| ||||    
T  2976505 ataaaaagatggtccttaaaatattcaatcattttttttatcaatttcttctttaatatt 2976446  T

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Target: scaffold0095 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 35388 - 35476
Alignment:
Q  190 caaattaataatgtttgaa--tacagatataaaaagattcttctcaaaatattcaatcatc-ttttttatcaatttcttccttattatt 275  Q
    ||||| |||||| ||||||  |||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  35388 caaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttctttcttattatt 35476  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 2141300 - 2141240
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatct-tttttatcaatttcttccttattatt 275  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||    
T  2141300 ataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctcattattatt 2141240  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 7080203 - 7080250
Alignment:
Q  216 ataaaaagattcttctcaaaatattcaatcatcttttttatcaatttc 263  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  7080203 ataaaaagattctcttcaaaatattcaataatcttttttatcaatttc 7080250  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 25336957 - 25336928
Alignment:
Q  233 aaaatattcaatcatcttttttatcaattt 262  Q
    ||||||||||||||||||||||||||||||    
T  25336957 aaaatattcaatcatcttttttatcaattt 25336928  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 26606207 - 26606240
Alignment:
Q  284 tacttttttatgtgtgtgtgaccaaacacttttt 317  Q
    ||||| ||||||||||||||||||||||||||||    
T  26606207 tacttgtttatgtgtgtgtgaccaaacacttttt 26606240  T

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Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 18145 - 18084
Alignment:
Q  186 agatcaaattaataatgtttgaatacagatataaaaagattcttctcaaaatattcaatcat 247  Q
    ||||| ||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||    
T  18145 agatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

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Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 18042 - 18009
Alignment:
Q  284 tacttttttatgtgtgtgtgaccaaacacttttt 317  Q
    ||||| ||||||||||||||||||||||||||||    
T  18042 tacttctttatgtgtgtgtgaccaaacacttttt 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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