View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18074_low_4 (Length: 427)

Name: NF18074_low_4
Description: NF18074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18074_low_4
NF18074_low_4
[»] chr3 (2 HSPs)
chr3 (9-411)||(39712253-39712658)
chr3 (21-408)||(11527878-11528266)
[»] chr2 (6 HSPs)
chr2 (9-408)||(28166167-28166571)
chr2 (33-408)||(44905035-44905416)
chr2 (33-209)||(37952800-37952976)
chr2 (43-187)||(37958560-37958704)
chr2 (43-187)||(37896498-37896642)
chr2 (313-407)||(37952596-37952690)
[»] chr1 (2 HSPs)
chr1 (9-408)||(13228416-13228820)
chr1 (9-408)||(40768118-40768522)
[»] chr4 (2 HSPs)
chr4 (50-408)||(11149161-11149524)
chr4 (33-408)||(34538655-34539034)
[»] chr7 (1 HSPs)
chr7 (33-408)||(38757172-38757552)
[»] chr5 (1 HSPs)
chr5 (9-190)||(6535327-6535513)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 39712253 - 39712658
Alignment:
Q  9 catcatcaccaccatcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgtt 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39712253 catcatcaccaccatcatcatttttatgcattgcttcaaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgtt 39712352  T
Q  109 gatttcatta---tcatttttcttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatct 205  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39712353 gatttcattattatcatttttcttccattgattcagcacccattttttcatcccctcaatttcttcttttccaaaagcaataattaccttaaaagaatct 39712452  T
Q  206 tcatgttctccagtgctttgactttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  39712453 tcatgttctccagtgctttgactttgagcaatgagtctaaacttccatgattttcttgtaaaaaaataatctcttaaaataagatcctcaagtcctctag 39712552  T
Q  306 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39712553 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcatcacctccttgatggataaaagaccaagatttcatgaaatgattgca 39712652  T
Q  406 actgtt 411  Q
    ||||||    
T  39712653 actgtt 39712658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 408
Target Start/End: Original strand, 11527878 - 11528266
Alignment:
Q  21 catcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc 120  Q
    ||||||| ||| |||| |||| ||||   |||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||    
T  11527878 catcatcgtttctatgtattgttttagttatactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgttatc 11527977  T
Q  121 atttttcttccattgattcagcaccca-ttttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagt 219  Q
    ||||||||||||||||||||||||  | |||||||||||  ||||||||||||||||||||| |||||||| |||||| | |||||| ||||||| |  |    
T  11527978 atttttcttccattgattcagcacatatttttttcatcctctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttgatgttcttcctt 11528077  T
Q  220 gctttgactttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaact 319  Q
    ||||||||||| |||||||||||||  |||||||||||||||  |       || || ||||| | || ||||||||||||||| |||||| ||||||||    
T  11528078 gctttgactttcagcaatgagtctatgcttccatgattttctcattacaaaatagtcccttaagaaaacatcctcaagtcctcttgggtccctcaaaact 11528177  T
Q  320 tctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaact 408  Q
    ||||| ||||||||||||||||| ||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  11528178 tctctgtcaaaacaaggtagtgatttcaattcaactacatcacctctttgatggataaaagaccaagatttcatgaaatgatcgcaact 11528266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 28166167 - 28166571
Alignment:
Q  9 catcatcaccaccatcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgtt 108  Q
    ||||||| ||| ||||||| | | |||| ||||||||||| ||||||| |||||| |||||| ||||||| |||||||||| |||||||| |||||||||    
T  28166167 catcatcgccatcatcatcgtatctatgtattgctttaactatactagaccaaacgaaagcacaagttacgacaaatttagttagaaattgtggcacgtt 28166266  T
Q  109 gatttcattatc------atttttcttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaa 202  Q
    |||||| |||||      ||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||| |||||||| | |||| | ||    
T  28166267 gatttctttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgctttaataaaa 28166366  T
Q  203 tcttcatgttctccagtgctttgactttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctc 302  Q
    ||||||||||||   ||| ||||| ||| |||||||||||||  |||||||||||||||  |       || || || || | || || ||||||||||     
T  28166367 tcttcatgttctttggtggtttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcactgaagaaaacattctcaagtcct- 28166465  T
Q  303 tagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgatt 402  Q
    |  ||||| ||||||||||||| ||||||||||||| ||||||||||||| || | |  |||||||||||||||||||||||||||||||||||||||||    
T  28166466 tttggtccctcaaaacttctctgtcaaaacaaggtaatgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgatt 28166565  T
Q  403 gcaact 408  Q
    ||||||    
T  28166566 gcaact 28166571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 44905035 - 44905416
Alignment:
Q  33 tatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------attttt 126  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||| |||||      ||||||    
T  44905035 tatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttgccattttt 44905134  T
Q  127 cttccattgattcagcacccatttttt-catcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttg 225  Q
    ||||||||||| ||  ||  ||||||| |||||| ||||||||||||||||||||| |||||||| |||||| | ||| ||||||||||   ||| ||||    
T  44905135 cttccattgatccattacatatttttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatgttcatgttctttggtgatttg 44905234  T
Q  226 actttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctcta 325  Q
    | ||| |||||||||||||  |||||||||||||||  |       || ||  | || | || ||  ||||||||| | || ||| |||||||||||||     
T  44905235 agtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattttcaagtccttttgg-tccctcaaaacttctctg 44905333  T
Q  326 tcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaact 408  Q
    |||||||||| |||||||||||||||| || | |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44905334 tcaaaacaagatagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgcaact 44905416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 37952976 - 37952800
Alignment:
Q  33 tatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttcca 132  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |||  | | |||||| | ||| |||||||||||    
T  37952976 tatgcattgctttaaccaaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttgatcttttttcttcca 37952877  T
Q  133 ttgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcat 209  Q
    || |||||  ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| | |||||||||    
T  37952876 ttcattcaatacccattttttcatcccctcgatttcttcttttccgaaaacaataattgccttaacacaatcttcat 37952800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 37958704 - 37958560
Alignment:
Q  43 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccattgattcagc 142  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||| ||||| |||| | |  | ||||  ||||||||||||||||||||  ||     
T  37958704 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgcttgaacttcacaatcatttttcttccattgatcaagt 37958605  T
Q  143 acccattttttcatcccttcaatttcttcttttccaaaagcaata 187  Q
     ||||| ||||||| |  ||||||||||||||| ||||| |||||    
T  37958604 gcccatattttcattctctcaatttcttcttttgcaaaaacaata 37958560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 37896498 - 37896642
Alignment:
Q  43 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccattgattcagc 142  Q
    |||||||| ||||| |||||  ||| || |||||||||||||||||||||  |||| |||| | |  | ||||| ||||||||||||||||||||| ||     
T  37896498 tttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgcttgaacttcatgatcatttttcttccattgattaagt 37896597  T
Q  143 acccattttttcatcccttcaatttcttcttttccaaaagcaata 187  Q
     ||||| ||||||| |  |||||||| |||||| ||||| |||||    
T  37896598 gcccatattttcattctctcaatttcctcttttgcaaaaacaata 37896642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 37952690 - 37952596
Alignment:
Q  313 caaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaac 407  Q
    |||||||| ||| |||||||||||| | ||||| || ||| || | ||||||    ||||||||||||||||||||||||| |||||||||||||    
T  37952690 caaaacttgtctgtcaaaacaaggttgcgacttgaagtcaactacatcacctttacgatggataaaagaccaagatttcattaaatgattgcaac 37952596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 13228820 - 13228416
Alignment:
Q  9 catcatcaccaccatcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgtt 108  Q
    ||||||| ||| ||||||| | | |||| ||||||||||  |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| ||||    
T  13228820 catcatcgccatcatcatcgtatctatgtattgctttaaatatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgtt 13228721  T
Q  109 gatttcattatc------atttttcttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaa 202  Q
    |||||| |||||      ||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||| |||| ||||||||  ||||| | ||    
T  13228720 gatttccttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttctaaaaacaataattgtcttaacaaaa 13228621  T
Q  203 tcttcatgttctccagtgctttgactttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctc 302  Q
    ||||||||||||   ||| ||||| ||| |||||||||||||  |||||||||||||||| |       || || || || | || || ||||||| ||     
T  13228620 tcttcatgttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttcttattgcaaaatagtcactgaagaaaacattctcaagttctt 13228521  T
Q  303 tagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgatt 402  Q
    | || ||| ||||||||||||| ||||||||||||||||||||||||||| || | |  ||||||| |||||||||||||||||||||||||||||||||    
T  13228520 ttgg-tccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactacatttcctcctttatggataaaagaccaagatttcatgaaatgatt 13228422  T
Q  403 gcaact 408  Q
    ||||||    
T  13228421 gcaact 13228416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 40768118 - 40768522
Alignment:
Q  9 catcatcaccaccatcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgtt 108  Q
    ||||||| ||| ||||||||| | |||| ||||||||||| |||||||||||||| ||| || ||||||| ||||||||||||||||||| |||||||||    
T  40768118 catcatcgccatcatcatcatatctatgtattgctttaactatactagcccaaacgaaatcacaagttacgacaaatttagatagaaattgtggcacgtt 40768217  T
Q  109 gatttcattatc------atttttcttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaa 202  Q
    |||||| |||||      ||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||    
T  40768218 gatttccttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaa 40768317  T
Q  203 tcttcatgttctccagtgctttgactttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctc 302  Q
    ||||||||||||   ||| ||||| ||| | |||||||||||  ||||||| |||||||  |       || || || || | || || |||| |||||     
T  40768318 tcttcatgttctttggtgatttgagtttcaacaatgagtctaggcttccataattttctcattgcaaaatagtcactgaagaaaacattctcatgtcct- 40768416  T
Q  303 tagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgatt 402  Q
    |  ||||  | ||||||||||| ||||||||||| ||||||||||||| | || | |   ||||||||||||||||||||||||||||||| ||||||||    
T  40768417 tttggtctcttaaaacttctctgtcaaaacaaggcagtgacttcaatttaactacattttctccttgatggataaaagaccaagatttcataaaatgatt 40768516  T
Q  403 gcaact 408  Q
    ||||||    
T  40768517 gcaact 40768522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 50 - 408
Target Start/End: Complemental strand, 11149524 - 11149161
Alignment:
Q  50 atactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattat------catttttcttccattgattcagca 143  Q
    |||||| ||||| | |||||| ||||||| ||||| | ||||||||||| ||||||||||||||| ||||      ||||||||||||||||||||||||    
T  11149524 atactaacccaagcgaaagcacaagttacgacaaaatgagatagaaattgtggcacgttgatttccttattgttgccatttttcttccattgattcagca 11149425  T
Q  144 cccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttgagcaatgagtct 243  Q
    |  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||   ||| ||| | ||| ||||||||||||    
T  11149424 catattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttggtgatttcagtttcagcaatgagtct 11149325  T
Q  244 aaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaaacaaggtagtgac 343  Q
    |  |||||||||||||||  |       || || || || | || || |||||||||| |  ||||| |||||||||||||||||||||||||||||| |    
T  11149324 attcttccatgattttctcattgcaaaatagtcactgaagaaaatattctcaagtcct-tttggtccctcaaaacttctctatcaaaacaaggtagtgtc 11149226  T
Q  344 ttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaact 408  Q
    ||||||||| || | |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  11149225 ttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgcaact 11149161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 34538655 - 34539034
Alignment:
Q  33 tatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatt-----tttc 127  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||||  ||||||||| ||||||||| |||| |||||||||| ||||| ||     |||     
T  34538655 tatgtattgctttaactatactagcccaaacgaaagcataagttatgacaaatttacatagaaattgtggcgcgttgatttccttatcgttgccattttt 34538754  T
Q  128 ttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgac 227  Q
    || |||||||| || ||  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||   ||| |||||     
T  34538755 tttcattgattaagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttggtgatttgag 34538854  T
Q  228 tttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatc 327  Q
    ||| || ||||||||||  |||||||||||||||  |       || || |  || | || || |||||||||| | || ||| ||||||||||| | ||    
T  34538855 tttcagtaatgagtctaggcttccatgattttctcattgcaaaatagtcaccgaagaaaacattctcaagtccttttgg-tccctcaaaacttctttgtc 34538953  T
Q  328 aaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaact 408  Q
    ||||||||||||||||||||||||| || | |  |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  34538954 aaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagatcaatatttcatgaaatgattgcaact 34539034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 38757172 - 38757552
Alignment:
Q  33 tatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------attttt 126  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| | || |||||||||| |||||      ||||||    
T  38757172 tatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttatcgttgccattttt 38757271  T
Q  127 cttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttga 226  Q
    |||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||| ||||||||   |||| | ||||||||||||||   ||| |||||    
T  38757272 cttccattgattcagtgcatattttttcatcccctcaatttcttctttttcaaaaacaataattgttttaacaaaatcttcatgttctttggtgatttga 38757371  T
Q  227 ctttgagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctat 326  Q
     ||| |||||||||||||  |||||||||||||||  |       |  || || || | || || |||||||||| | || ||| ||||||||||||| |    
T  38757372 gtttcagcaatgagtctaggcttccatgattttctcattgtaaaatggtcactgaagaaaacattctcaagtccttttgg-tccctcaaaacttctctgt 38757470  T
Q  327 caaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaact 408  Q
    |||||||||||||||||||||||||| || | |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38757471 caaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgcaact 38757552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 6535327 - 6535513
Alignment:
Q  9 catcatcaccaccatcatcatttttatgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgtt 108  Q
    ||||||| ||| ||||||| | | |||| ||||||||||| |||||||| ||||| |||||| || ||||  |||||||||||||||||| |||| ||||    
T  6535327 catcatcgccatcatcatcgtatctatgtattgctttaactatactagctcaaacgaaagcacaaattacggcaaatttagatagaaattgtggcgcgtt 6535426  T
Q  109 gatttcattat------catttttcttccattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataatt 190  Q
    |||||  ||||      ||||||||||||||||||| || ||  |||||||||||||  |||||||||||||||||||| ||||||||    
T  6535427 gattttcttattgttgccatttttcttccattgattaagtacatattttttcatccc-ccaatttcttcttttccaaaaacaataatt 6535513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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