View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18074_low_5 (Length: 403)
Name: NF18074_low_5
Description: NF18074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18074_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 66 - 385
Target Start/End: Original strand, 6834180 - 6834499
Alignment:
| Q |
66 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6834180 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttcgt |
6834279 |
T |
|
| Q |
166 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6834280 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
6834379 |
T |
|
| Q |
266 |
tcttctggctatattgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcttaggatgttccgg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6834380 |
tcttctggctatattgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcttaggatgttccgg |
6834479 |
T |
|
| Q |
366 |
cacatatcttggcttatgtt |
385 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6834480 |
cacatatcttggcttatgtt |
6834499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 6819654 - 6820023
Alignment:
| Q |
16 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6819654 |
atgaatatatagatgtttagacaaatgaaatgaacatatagaagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6819753 |
T |
|
| Q |
116 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6819754 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaag |
6819853 |
T |
|
| Q |
216 |
aaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatctcttctggctatattgttgcaaatttctacattcccaagctctgctgcaa |
315 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||| ||| |||| | ||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6819854 |
aaaagaggagtttcgccttcgaaatttcgatacgaaatgaggataggacatcttttagctatgttgttgcaaatgtctacattcccaagctctgcagcaa |
6819953 |
T |
|
| Q |
316 |
catgaagaggagtatttccctttgagttttgcattcttaggatgttccggcacatatcttggcttatgtt |
385 |
Q |
| |
|
||||||| || ||||||||||| ||||||||| |||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
6819954 |
catgaaggggggtatttcccttcgagttttgcgttcttaggatgttcatgcacacgtcttggcatatgtt |
6820023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 6813098 - 6813442
Alignment:
| Q |
16 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813098 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6813197 |
T |
|
| Q |
116 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaag |
215 |
Q |
| |
|
||| ||||| ||||| |||||| ||| | ||||||||||| ||| || ||| ||||||||||||||| || |||||||| |||| |||||||||||| |
|
|
| T |
6813198 |
gtccccattattttttcttgaaactgaataatcatctttgtcctgatgacgactatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
6813297 |
T |
|
| Q |
216 |
aaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatctcttctggctatattgttgcaaatttctacattcccaagctctgctgcaa |
315 |
Q |
| |
|
||||||||||| |||||||| ||||||||| | ||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813298 |
aaaagaggagtttcgccttcgaaatttcgacaggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaa |
6813397 |
T |
|
| Q |
316 |
catgaagaggagtatttccctttgagttttgcattcttaggatgt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6813398 |
catgaagaggagtatttccctttgagttttgcattcgtaggatgt |
6813442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 34778826 - 34778905
Alignment:
| Q |
103 |
aatgaagaatagtgtctccattgtttttg--attgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaa |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34778826 |
aatgaagaatggtgtctccattgttttttttattgaaagtgaatcatcatctttattctgttggtgaccatgaagacaaa |
34778905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University