View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18075_high_1 (Length: 667)
Name: NF18075_high_1
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 12 - 649
Target Start/End: Original strand, 7308781 - 7309423
Alignment:
| Q |
12 |
gaataatatgagttgagaattcgaaaagaaaataataatataaaagagcatctaatcgtccaaaggaattcagatttccttattcggaaaaatctcgcaa |
111 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7308781 |
gaataatacgaattgagaattcgaaaagaaaataataatataaaagagcatctaatagtccaaaggaattcagatttccttattcggaaaaatctcgcaa |
7308880 |
T |
|
| Q |
112 |
taaccatgtcattaactatcggatcaagattgaacg-tgtagatttcaacgtcgagtcgagatgttggtgtttaaggaaatcaaataaaaactttgtttg |
210 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
7308881 |
tcaccatgtcattaactatcggatcaagattgaacggtgtagatttcaacgtcgagtcgagatgtcagtgtttaaggaaatcaaataaaaactttgcttg |
7308980 |
T |
|
| Q |
211 |
aaatcttcattcttagatcttaatccaacagtcaccaacatatgagtccgtgaatgctggattttagcaacagaaaggaatccaaattctcctcct---a |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
7308981 |
aaatcttcattcttagatcttaatccaacagtcaccaacatatgagttcgtgaatgctggattttagcaacagaaagaaatccaaattctcctccttata |
7309080 |
T |
|
| Q |
308 |
acctagcagccttatgcttaatattaataaaa-tttaacacaaaaataatggaattaaagttgaagtaaaataacatatactcaccagtgacaccagaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7309081 |
acctagcagccttatgcttaatattaataaaaatttaacacacagataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaa |
7309180 |
T |
|
| Q |
407 |
caacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309181 |
caacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaa |
7309280 |
T |
|
| Q |
507 |
aattcccgtcaatggttccaaacctaactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatccta |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309281 |
aattcccgtcaatggttccaaacctaactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatccta |
7309380 |
T |
|
| Q |
607 |
ttccctgctaaatccttaaacatcggccctttcttaacatcac |
649 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309381 |
ttccctgctaaatccttaaacatcggccctttcttaacatcac |
7309423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 403 - 512
Target Start/End: Original strand, 7299415 - 7299524
Alignment:
| Q |
403 |
gaaacaacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgca |
502 |
Q |
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|||||||||||||||||||| | ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| || || | |
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| T |
7299415 |
gaaacaacatcagtagcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgta |
7299514 |
T |
|
| Q |
503 |
gcaaaattcc |
512 |
Q |
| |
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||||||||| |
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| T |
7299515 |
acaaaattcc |
7299524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 786654 - 786541
Alignment:
| Q |
396 |
gacaccagaaacaacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggt |
495 |
Q |
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|||||||||||| || || ||||| |||||| ||| ||||||||| | || || |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
786654 |
gacaccagaaaccacctcggtagccgaaatacgatgaaaaggaagaccggtctcgttagcaatagcatgagcaagtctagtctttccacaaccaggtggt |
786555 |
T |
|
| Q |
496 |
ccgtgcagcaaaat |
509 |
Q |
| |
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|| ||||||||||| |
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| T |
786554 |
ccatgcagcaaaat |
786541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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