View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18075_high_6 (Length: 373)

Name: NF18075_high_6
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18075_high_6
NF18075_high_6
[»] chr4 (29 HSPs)
chr4 (164-217)||(21266892-21266945)
chr4 (164-217)||(56497618-56497671)
chr4 (172-214)||(9114980-9115022)
chr4 (164-217)||(10006338-10006391)
chr4 (164-216)||(17134124-17134176)
chr4 (168-216)||(54500568-54500616)
chr4 (172-215)||(470336-470379)
chr4 (161-216)||(2587707-2587762)
chr4 (159-210)||(49949339-49949390)
chr4 (168-214)||(31760247-31760293)
chr4 (159-216)||(7922255-7922312)
chr4 (168-221)||(21317352-21317405)
chr4 (169-214)||(34942426-34942471)
chr4 (169-217)||(47016613-47016664)
chr4 (167-216)||(47266151-47266200)
chr4 (168-216)||(7230279-7230327)
chr4 (175-223)||(12198961-12199009)
chr4 (176-216)||(14136090-14136130)
chr4 (164-216)||(17283005-17283057)
chr4 (164-216)||(18903768-18903820)
chr4 (166-218)||(19124634-19124686)
chr4 (168-216)||(25404658-25404706)
chr4 (164-216)||(31041375-31041427)
chr4 (168-216)||(36203235-36203283)
chr4 (172-216)||(37208039-37208083)
chr4 (159-215)||(38297942-38297998)
chr4 (168-216)||(49952685-49952733)
chr4 (159-215)||(50442752-50442808)
chr4 (164-216)||(52270040-52270092)
[»] chr1 (18 HSPs)
chr1 (164-222)||(33577922-33577980)
chr1 (159-218)||(3136692-3136752)
chr1 (159-220)||(41926817-41926878)
chr1 (171-216)||(22021418-22021463)
chr1 (168-216)||(36371054-36371102)
chr1 (161-216)||(26498060-26498115)
chr1 (166-216)||(3693808-3693858)
chr1 (164-214)||(13261172-13261222)
chr1 (169-215)||(34808578-34808624)
chr1 (168-217)||(17283949-17283998)
chr1 (175-216)||(34632168-34632209)
chr1 (168-217)||(38448880-38448929)
chr1 (159-204)||(48639019-48639064)
chr1 (168-216)||(3528483-3528531)
chr1 (164-216)||(30937474-30937526)
chr1 (161-217)||(38213995-38214051)
chr1 (168-216)||(52441525-52441573)
chr1 (168-216)||(52592441-52592489)
[»] chr7 (17 HSPs)
chr7 (159-217)||(32566046-32566104)
chr7 (164-215)||(30296333-30296384)
chr7 (162-215)||(21050230-21050283)
chr7 (168-217)||(38858186-38858235)
chr7 (168-217)||(41029270-41029319)
chr7 (169-217)||(38911297-38911345)
chr7 (166-208)||(769043-769085)
chr7 (166-215)||(3196654-3196703)
chr7 (168-216)||(20135175-20135224)
chr7 (164-209)||(27383739-27383784)
chr7 (168-217)||(27544955-27545004)
chr7 (164-217)||(37451247-37451300)
chr7 (164-216)||(5458081-5458133)
chr7 (164-192)||(19793544-19793572)
chr7 (164-216)||(24839487-24839539)
chr7 (176-216)||(32263006-32263046)
chr7 (165-217)||(48007558-48007610)
[»] chr6 (22 HSPs)
chr6 (168-221)||(4450256-4450309)
chr6 (164-216)||(28592697-28592749)
chr6 (164-214)||(6503261-6503311)
chr6 (175-217)||(6631171-6631213)
chr6 (164-213)||(334142-334191)
chr6 (164-217)||(2262191-2262244)
chr6 (168-221)||(20720795-20720848)
chr6 (12-44)||(862089-862121)
chr6 (171-218)||(6470633-6470680)
chr6 (165-216)||(7083003-7083054)
chr6 (161-216)||(8810639-8810694)
chr6 (161-216)||(18256882-18256937)
chr6 (166-216)||(6365985-6366035)
chr6 (167-216)||(7081667-7081716)
chr6 (169-218)||(28046193-28046242)
chr6 (175-215)||(5925320-5925360)
chr6 (168-216)||(9333730-9333778)
chr6 (169-217)||(17177961-17178009)
chr6 (169-217)||(19581445-19581493)
chr6 (164-216)||(20744137-20744189)
chr6 (159-215)||(29041607-29041663)
chr6 (164-216)||(30374542-30374594)
[»] chr5 (29 HSPs)
chr5 (161-217)||(43135200-43135257)
chr5 (172-218)||(3955543-3955589)
chr5 (168-218)||(43396851-43396901)
chr5 (169-230)||(6272591-6272652)
chr5 (162-215)||(17861443-17861496)
chr5 (169-218)||(31308658-31308707)
chr5 (169-217)||(17338718-17338766)
chr5 (159-215)||(22498942-22498998)
chr5 (164-216)||(32559303-32559355)
chr5 (168-215)||(4763200-4763247)
chr5 (167-214)||(33753977-33754024)
chr5 (169-216)||(40034403-40034450)
chr5 (168-218)||(26409250-26409300)
chr5 (169-216)||(31114658-31114707)
chr5 (168-210)||(31305900-31305942)
chr5 (167-216)||(17151855-17151904)
chr5 (168-217)||(28604432-28604481)
chr5 (159-216)||(33645694-33645751)
chr5 (175-215)||(1745979-1746019)
chr5 (164-216)||(6489006-6489058)
chr5 (171-215)||(9123862-9123906)
chr5 (166-210)||(13914455-13914499)
chr5 (168-216)||(16133079-16133127)
chr5 (164-192)||(19647518-19647546)
chr5 (164-216)||(23118061-23118113)
chr5 (169-217)||(27679496-27679544)
chr5 (164-216)||(36321504-36321556)
chr5 (168-216)||(40715963-40716011)
chr5 (169-217)||(42964507-42964555)
[»] scaffold0262 (1 HSPs)
scaffold0262 (164-216)||(15940-15992)
[»] chr3 (21 HSPs)
chr3 (166-217)||(27199434-27199484)
chr3 (160-214)||(6000674-6000728)
chr3 (164-216)||(21245792-21245844)
chr3 (164-216)||(48376834-48376886)
chr3 (168-215)||(13042814-13042861)
chr3 (168-215)||(13050891-13050938)
chr3 (159-216)||(1149073-1149131)
chr3 (175-221)||(8113583-8113629)
chr3 (159-217)||(22462310-22462368)
chr3 (169-215)||(22843464-22843510)
chr3 (169-215)||(25289328-25289374)
chr3 (169-215)||(38898224-38898270)
chr3 (159-217)||(46469275-46469333)
chr3 (176-221)||(28595783-28595828)
chr3 (164-217)||(33745097-33745150)
chr3 (164-217)||(53207968-53208021)
chr3 (164-217)||(55494687-55494740)
chr3 (166-210)||(10295763-10295807)
chr3 (164-192)||(26983396-26983424)
chr3 (164-216)||(28130944-28130996)
chr3 (168-216)||(33771689-33771737)
[»] chr2 (25 HSPs)
chr2 (166-217)||(24393243-24393294)
chr2 (168-217)||(12893258-12893307)
chr2 (164-217)||(44926411-44926464)
chr2 (168-215)||(13000685-13000732)
chr2 (166-217)||(19179062-19179113)
chr2 (168-223)||(24593368-24593423)
chr2 (166-217)||(36013941-36013992)
chr2 (162-217)||(39761436-39761491)
chr2 (173-215)||(7060716-7060758)
chr2 (166-216)||(27412848-27412898)
chr2 (169-218)||(2429013-2429062)
chr2 (168-209)||(4137997-4138038)
chr2 (176-221)||(7413211-7413256)
chr2 (172-209)||(7792287-7792324)
chr2 (176-217)||(9459079-9459120)
chr2 (168-216)||(7206124-7206172)
chr2 (168-212)||(8086407-8086451)
chr2 (168-216)||(10332289-10332337)
chr2 (169-217)||(18231488-18231536)
chr2 (168-216)||(20455890-20455938)
chr2 (171-215)||(23782360-23782404)
chr2 (168-216)||(28202296-28202344)
chr2 (167-223)||(32091184-32091240)
chr2 (164-216)||(35372949-35373001)
chr2 (169-217)||(39770541-39770589)
[»] scaffold1327 (1 HSPs)
scaffold1327 (166-216)||(555-605)
[»] scaffold0178 (1 HSPs)
scaffold0178 (164-217)||(5391-5444)
[»] chr8 (20 HSPs)
chr8 (169-221)||(36919305-36919357)
chr8 (164-216)||(44293574-44293626)
chr8 (168-215)||(574384-574431)
chr8 (168-215)||(9070958-9071005)
chr8 (159-210)||(9564840-9564891)
chr8 (169-216)||(12249500-12249547)
chr8 (164-215)||(30623293-30623344)
chr8 (171-222)||(37405785-37405836)
chr8 (166-216)||(17704012-17704062)
chr8 (159-221)||(28219857-28219919)
chr8 (166-216)||(34461799-34461849)
chr8 (298-331)||(7637722-7637755)
chr8 (167-216)||(8148440-8148489)
chr8 (169-218)||(16843538-16843587)
chr8 (168-217)||(19778063-19778112)
chr8 (168-212)||(444416-444460)
chr8 (164-216)||(16081305-16081357)
chr8 (168-212)||(24687782-24687826)
chr8 (164-216)||(26914081-26914133)
chr8 (164-216)||(39821883-39821935)
[»] scaffold0896 (1 HSPs)
scaffold0896 (161-216)||(3140-3195)
[»] scaffold0117 (1 HSPs)
scaffold0117 (175-218)||(18290-18333)
[»] scaffold0426 (1 HSPs)
scaffold0426 (164-217)||(5850-5903)
[»] scaffold0011 (1 HSPs)
scaffold0011 (169-214)||(189987-190032)
[»] scaffold0057 (1 HSPs)
scaffold0057 (166-214)||(35179-35227)
[»] scaffold0040 (1 HSPs)
scaffold0040 (168-216)||(56783-56831)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 21266892 - 21266945
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21266892 cccaaaccttacatatattatgcattgtctttaacaattgagctaagctcacgg 21266945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 56497618 - 56497671
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||    
T  56497618 cccagaccttgcatatattatgcattgtccttaccaattgagctaagctcacgg 56497671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 9114980 - 9115022
Alignment:
Q  172 ttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  9114980 ttacatatattattcattgtctttaacaactgagctaagctca 9115022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 10006391 - 10006338
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  10006391 cccagaccttgcatatattatgcattgtctttaccaaatgacctaagctcacgg 10006338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 17134176 - 17134124
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||| ||||||||| |||||||| || |||||||| ||||||||||    
T  17134176 cccagaccttatatatattatgcattgtctctaccaattgagttaagctcacg 17134124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 54500616 - 54500568
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  54500616 gaccttacatatattatgcattgtctctaccaactgagctaagctcacg 54500568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 470336 - 470379
Alignment:
Q  172 ttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||    
T  470336 ttacatatattatacattatctttatcaactgagctaagctcac 470379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 2587707 - 2587762
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| ||||||||||||||||| |||| ||  || |||||||||||||||||||    
T  2587707 gaacccggaccttacatatattatgcattatccataccaattgagctaagctcacg 2587762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 49949390 - 49949339
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaag 210  Q
    ||||||||||||||| |||||||||| ||||||| ||| ||| |||||||||    
T  49949390 tcgaacccagaccttgcatatattatgcattgtccttaccaactgagctaag 49949339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 31760293 - 31760247
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||||| ||||||||||||||||||| || ||| |||||||||||||    
T  31760293 gaccttgcatatattatacattgtctataccaactgagctaagctca 31760247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 7922255 - 7922312
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||| || ||| |||||||||| ||||||||||| ||| |||| ||||||||||    
T  7922255 tcgaacccggatcttgcatatattatgcattgtctttaccaactgagataagctcacg 7922312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 21317352 - 21317405
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    |||||| |||||||||| |||||||| || ||| ||||||||||||||| ||||    
T  21317352 gaccttgcatatattatgcattgtctctaccaactgagctaagctcacgaaaac 21317405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 34942426 - 34942471
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    ||||||||||||||||||||||||| || ||| ||| |||||||||    
T  34942426 accttacatatattatacattgtctctaccaactgaactaagctca 34942471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 47016664 - 47016613
Alignment:
Q  169 accttacatatattatacattgtcttt---aacaattgagctaagctcacgg 217  Q
    |||||||||||||||| ||||||||||   ||| ||||||||||||||||||    
T  47016664 accttacatatattatgcattgtctttatcaactattgagctaagctcacgg 47016613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 47266200 - 47266151
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||||||||||| || ||| ||| |||| ||||||    
T  47266200 agaccttacatatattatacattgtctataccaactgatctaaactcacg 47266151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 7230327 - 7230279
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  7230327 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 7230279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 12199009 - 12198961
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcacggaaactt 223  Q
    |||||||||  |||||| |||| ||||||||||||||||| ||||||||    
T  12199009 catatattacccattgtttttatcaattgagctaagctcatggaaactt 12198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 14136130 - 14136090
Alignment:
Q  176 atatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  14136130 atatattatgcattgtctttatcaactgagctaagctcacg 14136090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 17283057 - 17283005
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| ||||| ||||| ||||||||||||| || ||||||| |||||||||||    
T  17283057 cccaaaccttgcatattttatacattgtctataccaattgaactaagctcacg 17283005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 18903768 - 18903820
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||||| |||| | |||| ||| |||||||| ||||||    
T  18903768 cccagaccttacatatattatgcattatttttatcaactgagctaaactcacg 18903820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 19124634 - 19124686
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    |||||||| ||||||||||  |||||||||| ||| |||| ||||||||||||    
T  19124634 cagaccttgcatatattatgtattgtctttatcaactgagttaagctcacgga 19124686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 25404706 - 25404658
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||| ||||||||||  || ||| |||||||||||    
T  25404706 gaccttacatatattatatattgtctttactaactgatctaagctcacg 25404658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 31041375 - 31041427
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| ||||||||||||||||| | || ||| |||| ||||||||||    
T  31041375 cccagaccttgcatatattatacattgtttctaccaaatgagttaagctcacg 31041427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 36203283 - 36203235
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  36203283 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacg 36203235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 37208083 - 37208039
Alignment:
Q  172 ttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||  |||||||||| ||||||| |||||||||||    
T  37208083 ttacatatattatgtattgtctttaccaattgaactaagctcacg 37208039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 38297998 - 38297942
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||| | |||||||||| |||||||  || |||||||| |||||||||    
T  38297998 tcgaacccagaccctgcatatattatgcattgtccatatcaattgaggtaagctcac 38297942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 49952685 - 49952733
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| ||||||| ||| ||||||| |||||||||||    
T  49952685 gaccttgcatatattatgcattgtccttatcaattgatctaagctcacg 49952733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 50442752 - 50442808
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||| |||||||||| |||| ||  || ||| ||||||||||||||    
T  50442752 tcgaacccagaccttgcatatattatgcattatccctaccaactgagctaagctcac 50442808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 52270040 - 52270092
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| |||||||  || ||| |||||||||||||||    
T  52270040 cccagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 52270092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 33577980 - 33577922
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacggaaact 222  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||    
T  33577980 cccagaccttacatatattatacattgtccttagcaactgagctaaactcacggaaact 33577922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 3136692 - 3136752
Alignment:
Q  159 tcgaaccc-agaccttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  3136692 tcgaaccctagaccttacatatattatgcattgtctttaccaattgagctcagctcacgga 3136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 41926878 - 41926817
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacggaaa 220  Q
    |||||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||||| ||||    
T  41926878 tcgaacccggaccttacatatattatgcattgtccttaccaactgagctaagctcacagaaa 41926817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 22021463 - 22021418
Alignment:
Q  171 cttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||    
T  22021463 cttacatatattatacattgtccttagcaactgagctaagctcacg 22021418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 36371054 - 36371102
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  36371054 gaccttacatatattatgcattgtctctaccaactgagctaagctcacg 36371102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 26498115 - 26498060
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||| |||| |||||||  || ||| |||||||||||||||    
T  26498115 gaacccagaccttacatattttatgcattgtccgtaccaactgagctaagctcacg 26498060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 3693808 - 3693858
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||| | |||||| || ||| |||||||||||||||    
T  3693808 cagaccttacatatattatgctttgtctatatcaactgagctaagctcacg 3693858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 13261222 - 13261172
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||| ||||    
T  13261222 cccaaaccttacatatattatacattgtctttaccaactgagttaaactca 13261172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 34808578 - 34808624
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||| |||||||||| ||||||| ||||||| ||||||||||||||    
T  34808578 accttgcatatattatgcattgtccttaacaactgagctaagctcac 34808624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 17283998 - 17283949
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||| |||||||||| ||||||| ||| ||| ||||||||||||||||    
T  17283998 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgg 17283949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 34632209 - 34632168
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||| || ||| |||||||||||||||    
T  34632209 catatattatacattgtctataccaactgagctaagctcacg 34632168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 38448880 - 38448929
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||| |||||||||| ||||||| ||| ||| ||||||||||||||||    
T  38448880 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgg 38448929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 48639019 - 48639064
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattga 204  Q
    ||||||||| |||||||||||||||| |||||||  ||||||||||    
T  48639019 tcgaacccaaaccttacatatattatgcattgtccctaacaattga 48639064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 3528483 - 3528531
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||||||||| | || ||| |||||||| ||||||    
T  3528483 gaccttacatatattatacattgtttctatcaactgagctaaactcacg 3528531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 30937526 - 30937474
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||||||||||| ||| ||| | |||||| ||||||    
T  30937526 cccagaccttgcatatattatacattgtccttatcaactaagctaaactcacg 30937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 38213995 - 38214051
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||| ||||||||||||||||   ||  || ||||||||||||||||    
T  38213995 gaacccagaccttatatatattatacattgttcctactaactgagctaagctcacgg 38214051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 52441525 - 52441573
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| |||||||| || ||| |||||||||||||||    
T  52441525 gaccttgcatatattatgcattgtctataccaactgagctaagctcacg 52441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 52592441 - 52592489
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| ||||||||||| |||||| ||| |||||||||||| ||||||    
T  52592441 gaccttgcatatattatatattgtccttaccaattgagctaaactcacg 52592489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 32566046 - 32566104
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||| ||||| ||||||||||||| |||||||| ||| ||||||||||||||||    
T  32566046 tcgaacccaaaccttgcatatattatacactgtctttaccaactgagctaagctcacgg 32566104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 30296384 - 30296333
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||| |||||||||||||||||| ||| ||| ||||||||||||||    
T  30296384 cccagaccttgcatatattatacattgtccttaccaactgagctaagctcac 30296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 21050230 - 21050283
Alignment:
Q  162 aacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||||| |||||||||| ||||||| ||| ||| ||||||||||||||    
T  21050230 aacccagaccttgcatatattatgcattgtccttaccaactgagctaagctcac 21050283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 38858186 - 38858235
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||||||||||| || |||||||| ||||||| ||||||||||||    
T  38858186 gaccttacatatattatgcactgtctttaccaattgaactaagctcacgg 38858235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 41029319 - 41029270
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||| |||||||||||||||||| ||| ||| ||||||||||||||||    
T  41029319 gaccttgcatatattatacattgtccttaccaactgagctaagctcacgg 41029270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 38911345 - 38911297
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  38911345 accttgcatatattatacattgtctttatcaactgagttaagctcacgg 38911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 769043 - 769085
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagcta 208  Q
    |||| ||| |||||||||||||||||||||| |||||||||||    
T  769043 cagatcttgcatatattatacattgtctttaccaattgagcta 769085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 3196654 - 3196703
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||| ||| |||||||||||||||||||||| ||| |||||||| |||||    
T  3196654 cagaacttgcatatattatacattgtctttaccaactgagctaaactcac 3196703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 20135175 - 20135224
Alignment:
Q  168 gaccttacatatatt-atacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||| |||||||||||||| ||| |||||||||||||||    
T  20135175 gaccttgcatatatttatacattgtctttatcaactgagctaagctcacg 20135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 27383784 - 27383739
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaa 209  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  27383784 cccagaccttacatattttatacattgtccttaccaactgagctaa 27383739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 27545004 - 27544955
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||| |||||||||||||||||| ||| ||| |||| |||||||||||    
T  27545004 gaccttgcatatattatacattgtccttaccaactgagataagctcacgg 27544955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 37451247 - 37451300
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||||||||||||||| |||| || ||| ||| |||||||| |||||||    
T  37451247 cccagaccttacatatattatgcattatccttatcaactgagctaaactcacgg 37451300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 5458081 - 5458133
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| ||||||  ||| ||| |||||||||||||||    
T  5458081 cccagaccttgcatatattatgcattgttcttatcaactgagctaagctcacg 5458133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 19793572 - 19793544
Alignment:
Q  164 cccagaccttacatatattatacattgtc 192  Q
    |||||||||||||||||||||||||||||    
T  19793572 cccagaccttacatatattatacattgtc 19793544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 24839539 - 24839487
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||| |||| |||||||| || ||| |||| ||||||||||    
T  24839539 cccagaccttacatattttatgcattgtctataccaactgagttaagctcacg 24839487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 32263046 - 32263006
Alignment:
Q  176 atatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  32263046 atatattatacattgtctataccaactgagctaagctcacg 32263006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 48007558 - 48007610
Alignment:
Q  165 ccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||| |||||||||| ||||||| ||| ||| |||| |||||||||||    
T  48007558 ccagaccttgcatatattatgcattgtcattaccaactgagttaagctcacgg 48007610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 4450309 - 4450256
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    |||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  4450309 gaccttgcatatattatgcattgtctttatcaactgagctaagctcacggaaac 4450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 28592697 - 28592749
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||||| ||||||||||  ||||||| |||||||||||    
T  28592697 cccagaccttacatatattatgcattgtctttgccaattgaactaagctcacg 28592749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6503311 - 6503261
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||| ||||||||||||||||||||| || |||||||||||| ||||||||    
T  6503311 cccaaaccttacatatattatacattatccttaacaattgagttaagctca 6503261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 6631171 - 6631213
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  6631171 catatattatacattgtccttaccaattgagctaagctcacgg 6631213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 334191 - 334142
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctc 213  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||||||||||    
T  334191 cccagaccttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 2262191 - 2262244
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| |||| ||||| ||||||||||| ||||||||| ||||||||||    
T  2262191 cccagaccttgcatacattatgcattgtctttaccaattgagccaagctcacgg 2262244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 20720795 - 20720848
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    ||||||||||||||||| |||||||  |||||| ||||||||||||||| ||||    
T  20720795 gaccttacatatattatgcattgtccataacaactgagctaagctcacgaaaac 20720848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 862089 - 862121
Alignment:
Q  12 gaatattgattcaattaataaagagttgattca 44  Q
    |||||||||||||||||||||||||||||||||    
T  862089 gaatattgattcaattaataaagagttgattca 862121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 6470633 - 6470680
Alignment:
Q  171 cttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    |||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  6470633 cttacatatattatgcattgtctttatcaactgagttaagctcacgga 6470680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 7083003 - 7083054
Alignment:
Q  165 ccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||| ||| |||||||||| ||||||| ||| |||||||||||||||||||    
T  7083003 ccagatcttgcatatattatgcattgtccttaccaattgagctaagctcacg 7083054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 8810694 - 8810639
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| |||||||| ||||||||||  |||||||||| ||| |||||||||||||||    
T  8810694 gaactcagaccttgcatatattatgtattgtctttaccaactgagctaagctcacg 8810639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 18256937 - 18256882
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  18256937 gaacccggaccttgcatatattatgcattgtccttatcaactgagctaagctcacg 18256882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 6366035 - 6365985
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||| |||||||||||  ||||| ||||||| |||||||||||||||    
T  6366035 cagaccttgcatatattatatgttgtccttaacaactgagctaagctcacg 6365985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 7081667 - 7081716
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||| ||||||||||  |||||||||| ||| |||||||||||||||    
T  7081667 agaccttgcatatattatgtattgtctttatcaactgagctaagctcacg 7081716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 28046193 - 28046242
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||| |||||||||| ||||||||||| ||| ||| |||||||||||||    
T  28046193 accttgcatatattatgcattgtctttatcaactgaactaagctcacgga 28046242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 5925360 - 5925320
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  5925360 catatattatacattatctttaccaattgagttaagctcac 5925320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 9333778 - 9333730
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| ||||||| || ||||||| ||| |||||||||||||||||||    
T  9333778 gaccttgcatatataatgcattgtccttaccaattgagctaagctcacg 9333730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 17177961 - 17178009
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||| |||| || |||  |||||||||||||||||||    
T  17177961 accttacatatattatgcattttccttactaattgagctaagctcacgg 17178009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 19581493 - 19581445
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| ||||||||||  || ||||||| ||||||||||||||||||||    
T  19581493 accttgcatatattatgtatagtctttatcaattgagctaagctcacgg 19581445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 20744189 - 20744137
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| |||||||  || ||| |||||||||||||||    
T  20744189 cccagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 20744137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 29041663 - 29041607
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||| ||||||||||||||||||| ||||  ||||| ||||||| || |||||||    
T  29041663 tcgaactcagaccttacatatattatgcattacctttatcaattgatctgagctcac 29041607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 30374542 - 30374594
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| ||||| |||||||||||||||||| ||| |||||||| ||| ||||||    
T  30374542 cccaaaccttgcatatattatacattgtccttaccaattgaggtaaactcacg 30374594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 43135200 - 43135257
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagct-aagctcacgg 217  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  43135200 gaacccggaccttacatatattatgcattgtctttaccaattgagctaaagctcacgg 43135257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 3955589 - 3955543
Alignment:
Q  172 ttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  3955589 ttacatatattatgcattgtctttaccaattgaactaagctcacgga 3955543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 43396901 - 43396851
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||||||||||||||| ||||||||||  ||||||||||| |||||||||    
T  43396901 gaccttacatatattatgcattgtctttgtcaattgagctatgctcacgga 43396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 6272652 - 6272591
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacggaaactttaaaaaa 230  Q
    ||||||||||||||||||||||||  ||||||||||| |||  ||||||| | |||||||||    
T  6272652 accttacatatattatacattgtccctaacaattgagttaaattcacggagattttaaaaaa 6272591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 17861443 - 17861496
Alignment:
Q  162 aacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||| || ||||||||||||||||||||||||| ||| | ||||||||||||    
T  17861443 aacccaaactttacatatattatacattgtctttaccaactaagctaagctcac 17861496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 31308658 - 31308707
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||||||    
T  31308658 accttgcatatattatatattgtctttaccaactgagctaagctcacgga 31308707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 17338718 - 17338766
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| ||||||||||  |||||||||| ||||||||||||||||||||    
T  17338718 accttgcatatattatgtattgtctttaccaattgagctaagctcacgg 17338766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 22498998 - 22498942
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||| |||||||||| ||||||| ||| ||| |||| |||||||||    
T  22498998 tcgaacccagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 32559355 - 32559303
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||| |||| |||||||  || |||||||||||||||||||    
T  32559355 cccagaccttacatattttatgcattgtcaatatcaattgagctaagctcacg 32559303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 4763200 - 4763247
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||||| ||||||||||| |||||||| ||| |||||    
T  4763200 gaccttacatatattatgcattgtctttaccaattgagttaaactcac 4763247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 33753977 - 33754024
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||| ||||||||||||||||||||||||| ||| |||||||| ||||    
T  33753977 agactttacatatattatacattgtctttatcaactgagctaaactca 33754024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 40034403 - 40034450
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||||||    
T  40034403 accttacatatattatacattgtccatacgaattgagctaagctcacg 40034450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 26409300 - 26409250
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||||||||||||||| |||||||  || ||| |||||||||||||||||    
T  26409300 gaccttacatatattatgcattgtccataccaactgagctaagctcacgga 26409250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 31114707 - 31114658
Alignment:
Q  169 accttacatatattata--cattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||  ||||||||||| ||| |||||||||||||||    
T  31114707 accttacatatattatatacattgtctttatcaactgagctaagctcacg 31114658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 31305900 - 31305942
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaag 210  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||    
T  31305900 gaccttacatatattatgcattgtctttatcaattgagttaag 31305942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 17151855 - 17151904
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||| ||||||||||||||||||| || ||| ||| |||||||||||    
T  17151855 agaccttgcatatattatacattgtctctagcaactgaactaagctcacg 17151904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 28604432 - 28604481
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| |||||| ||||||||||| ||| |||||||| |||||||    
T  28604432 gaccttacatttattatgcattgtctttaccaactgagctaaactcacgg 28604481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 33645694 - 33645751
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||| |||||| ||||||||||||||||||  || ||| |||| ||||||||||    
T  33645694 tcgaaccccgaccttgcatatattatacattgtccataccaactgagttaagctcacg 33645751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 1746019 - 1745979
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  1746019 catatattatacattatctttaacaactgagttaagctcac 1745979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 6489058 - 6489006
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| |||||||  || ||| |||||||||||||||    
T  6489058 cccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacg 6489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 9123862 - 9123906
Alignment:
Q  171 cttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||||    
T  9123862 cttacatatattatgcattgtctttaccaactgagttaagctcac 9123906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 13914455 - 13914499
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaag 210  Q
    ||||||||||||||||||| || |||||||| |||||||| ||||    
T  13914455 cagaccttacatatattatgcactgtctttaccaattgagttaag 13914499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 16133079 - 16133127
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  16133079 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 16133127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 19647518 - 19647546
Alignment:
Q  164 cccagaccttacatatattatacattgtc 192  Q
    |||||||||||||||||||||||||||||    
T  19647518 cccagaccttacatatattatacattgtc 19647546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 23118061 - 23118113
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| |||||||||||||||| ||||||| ||| ||| |||| ||||||||||    
T  23118061 cccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacg 23118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 27679544 - 27679496
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| |||||||||| |||| |||||| ||| ||||||||||||||||    
T  27679544 accttgcatatattatgcattatctttaccaactgagctaagctcacgg 27679496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 36321504 - 36321556
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| ||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  36321504 cccaaaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 36321556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 40715963 - 40716011
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| |||||||  || |||||||||||||||||||    
T  40715963 gaccttgcatatattatgcattgtccatatcaattgagctaagctcacg 40716011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 42964555 - 42964507
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||||||||||| ||| ||| |||| |||| ||||||    
T  42964555 accttacatatattatacattgtccttatcaactgagataagttcacgg 42964507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 15940 - 15992
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||||||||||| ||| |||||||| ||||||||||    
T  15940 cccagaccttgcatatattatacattgtccttaccaattgagttaagctcacg 15992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 27199434 - 27199484
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  27199434 cagaccttacatatattatacattgtcctt-acaactgagctaagctcacgg 27199484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 6000674 - 6000728
Alignment:
Q  160 cgaacccagaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||||||| |||||| ||||||||| |||||||| || |||||||||||||||||    
T  6000674 cgaacccaaaccttatatatattatgcattgtctatatcaattgagctaagctca 6000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 21245844 - 21245792
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||||| ||||||| ||| ||| | |||||||||||||    
T  21245844 cccagaccttacatatattatgcattgtccttaccaactaagctaagctcacg 21245792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 48376886 - 48376834
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| |||||||||||||||| |||| |||||| ||| |||||||||||||||    
T  48376886 cccaaaccttacatatattatgcattatctttaccaactgagctaagctcacg 48376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 13042814 - 13042861
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||| ||||||||||| |||||||||| ||| ||||||||||||||    
T  13042814 gaccttgcatatattataaattgtctttaccaactgagctaagctcac 13042861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 13050891 - 13050938
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||| ||||||||||| |||||||||| ||| ||||||||||||||    
T  13050891 gaccttgcatatattataaattgtctttaccaactgagctaagctcac 13050938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 1149073 - 1149131
Alignment:
Q  159 tcgaaccc-agaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||| ||||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  1149073 tcgaaccctagaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 1149131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 8113583 - 8113629
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    |||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  8113583 catatattatgcattgtccttaccaactgagctaagctcacggaaac 8113629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 22462368 - 22462310
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||| || ||||||||||||| ||||||| ||| ||| |||| |||||||||||    
T  22462368 tcgaacccaaacattacatatattatgcattgtccttatcaactgagttaagctcacgg 22462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 22843510 - 22843464
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||||||||| |||||||||||  || ||||||||||||||    
T  22843510 accttacatatattatgcattgtctttactaactgagctaagctcac 22843464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 25289328 - 25289374
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  25289328 accttacatatattatacattgtttttaccaactgagctaagttcac 25289374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 38898224 - 38898270
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||    
T  38898224 accttacatatattatacattgtccttaccaactgagataagctcac 38898270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 46469333 - 46469275
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||| ||||||  ||||||||| ||||||| ||| ||| ||||||||||||||||    
T  46469333 tcgaaccccgaccttgaatatattatgcattgtccttaccaactgagctaagctcacgg 46469275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 28595828 - 28595783
Alignment:
Q  176 atatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  28595828 atatattatgcattgtctttaccaattgagttaagttcacggaaac 28595783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 33745150 - 33745097
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| ||||| |||| |||||||  || ||||||||||||||||||||    
T  33745150 cccagaccttgcatattttatgcattgtccatatcaattgagctaagctcacgg 33745097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 53208021 - 53207968
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||| |||||||||| ||||| | ||| ||| ||||||||||||||||    
T  53208021 cccagaccttgcatatattatgcattgcccttaccaactgagctaagctcacgg 53207968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 55494740 - 55494687
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| ||||||||||||||| |||||||  || ||||||||||| ||||||||    
T  55494740 cccagtccttacatatattatgcattgtccctaccaattgagctatgctcacgg 55494687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 10295807 - 10295763
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaag 210  Q
    |||||| |||||||||||| |||||||  ||||||||||||||||    
T  10295807 cagaccgtacatatattatgcattgtccctaacaattgagctaag 10295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 26983424 - 26983396
Alignment:
Q  164 cccagaccttacatatattatacattgtc 192  Q
    |||||||||||||||||||||||||||||    
T  26983424 cccagaccttacatatattatacattgtc 26983396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 28130944 - 28130996
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| ||||||| ||| || |||| |||||||||||    
T  28130944 cccagaccttgcatatattatgcattgtccttaccatttgaactaagctcacg 28130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 33771737 - 33771689
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||||||||||| ||| ||| |||| ||||||||||    
T  33771737 gaccttgcatatattatacattgtccttaccaactgagttaagctcacg 33771689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 24393294 - 24393243
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||| |||||||||| ||||||| ||||||| ||||||||||||||||    
T  24393294 cagaccttgcatatattatgcattgtccttaacaactgagctaagctcacgg 24393243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 12893258 - 12893307
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||||||||||    
T  12893258 gaccttacatatattatacattgttcttatcaactgagctaagctcacgg 12893307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 44926411 - 44926464
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||||| || ||||||||||| ||| |||| |||||||||||    
T  44926411 cccagaccttacatatataatgcattgtctttaccaactgagataagctcacgg 44926464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 13000732 - 13000685
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||||| |||| |||||| ||| ||||||||||||||    
T  13000732 gaccttacatatattatgcattatctttaccaactgagctaagctcac 13000685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 19179062 - 19179113
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||| |||||||||| ||||||| ||| ||| ||||||||||||||||    
T  19179062 cagaccttgcatatattatgcattgtccttaccaactgagctaagctcacgg 19179113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 24593423 - 24593368
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacggaaactt 223  Q
    |||||| |||||||||| ||||||| ||| ||| ||||||||||||||||| ||||    
T  24593423 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacggagactt 24593368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 36013941 - 36013992
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| || |||||||||||||| ||| ||| ||||||||||||||||||||    
T  36013941 cagacgttgcatatattatacatcgtccttaccaattgagctaagctcacgg 36013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 39761491 - 39761436
Alignment:
Q  162 aacccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||| |||||||||| ||||||| ||| ||| |||||||| |||||||    
T  39761491 aacccagaccttgcatatattatgcattgtccttatcaactgagctaaactcacgg 39761436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 7060758 - 7060716
Alignment:
Q  173 tacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  7060758 tacatatattacacattgtctctatcaattgagctaagctcac 7060716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 27412848 - 27412898
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||||| |||||||| || ||| |||| ||||||||||    
T  27412848 cagaccttacatatattatgcattgtctctaccaactgagttaagctcacg 27412898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 2429062 - 2429013
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    |||||||||||||||| ||||||| ||| ||| ||| |||||||||||||    
T  2429062 accttacatatattatgcattgtccttaccaactgaactaagctcacgga 2429013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 4138038 - 4137997
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaa 209  Q
    |||||| |||||||||||||||||| ||| ||||||||||||    
T  4138038 gaccttgcatatattatacattgtccttaccaattgagctaa 4137997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 7413211 - 7413256
Alignment:
Q  176 atatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    ||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  7413211 atatattatgcattgtccttaccaactgagctaagctcacggaaac 7413256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 7792324 - 7792287
Alignment:
Q  172 ttacatatattatacattgtctttaacaattgagctaa 209  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  7792324 ttacatatattatgcattgtctttatcaattgagctaa 7792287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 9459079 - 9459120
Alignment:
Q  176 atatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||    
T  9459079 atatattatgcattgtctttatcaactgagctaagctcacgg 9459120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 7206172 - 7206124
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| |||||||| || ||| |||||||||||||||    
T  7206172 gaccttgcatatattatgcattgtctctaccaactgagctaagctcacg 7206124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 8086407 - 8086451
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagct 212  Q
    |||||||||||||||||||| ||||  |||||| |||||||||||    
T  8086407 gaccttacatatattatacagtgtccctaacaactgagctaagct 8086451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 10332289 - 10332337
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  10332289 gaccttccatatattatgcattgtccttatcaactgagctaagctcacg 10332337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 18231488 - 18231536
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||| |||||||||| ||||||| ||| ||| ||||||||||||||||    
T  18231488 accttgcatatattatgcattgtccttaccaactgagctaagctcacgg 18231536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 20455938 - 20455890
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||| |||||||  || |||||||||||||||||||    
T  20455938 gaccttgcatatattatgcattgtccataccaattgagctaagctcacg 20455890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 23782360 - 23782404
Alignment:
Q  171 cttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||||    
T  23782360 cttacatatattatttattgtctttaccaattgagctaagttcac 23782404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 28202344 - 28202296
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||||||||||||| |||||||  || ||| |||||||||||||||    
T  28202344 gaccttacatatattatgcattgtccctatcaactgagctaagctcacg 28202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 32091184 - 32091240
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctcacggaaactt 223  Q
    ||||||| |||||||||| |||| || ||| |||||||| |||||||||||| ||||    
T  32091184 agaccttgcatatattatgcattttccttaccaattgagttaagctcacggagactt 32091240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 35372949 - 35373001
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| ||||||||||| |||||| ||| ||| ||||||| |||||||    
T  35372949 cccagaccttgcatatattatatattgtccttaccaactgagctatgctcacg 35373001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 39770541 - 39770589
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||| ||||||| ||| || |||||||||| ||||||    
T  39770541 accttacatatattatgcattgtccttaccagttgagctaagttcacgg 39770589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 605 - 555
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  605 cagaccttacatatattatacactgtccttatcaactgagctaagctcacg 555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 5391 - 5444
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||| |||||||||||    
T  5391 cccagaccttatatatattatacgttgtctttaaaaatagagttaagctcacgg 5444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 36919357 - 36919305
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    |||||||||||||||||||||||  ||| ||| |||| |||||||||||||||    
T  36919357 accttacatatattatacattgttcttaccaactgagttaagctcacggaaac 36919305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 44293626 - 44293574
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| |||||||||||||| |||||||| || ||| |||||||||||||||    
T  44293626 cccagatcttacatatattatgcattgtctataccaactgagctaagctcacg 44293574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 574431 - 574384
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||||| |||||||| || ||| ||||||||||||||    
T  574431 gaccttacatatattatgcattgtctatatcaactgagctaagctcac 574384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 9071005 - 9070958
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  9071005 gaccttacatatattatacattgtccttaccaactgagctatgctcac 9070958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 9564891 - 9564840
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaag 210  Q
    |||||| ||||||||| ||||| ||||||||||||||  |||||||||||||    
T  9564891 tcgaactcagaccttatatatactatacattgtctttgtcaattgagctaag 9564840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 12249500 - 12249547
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||| ||||||||||||||| |||||| |||||||| ||||||||||    
T  12249500 accttgcatatattatacattatctttaccaattgagttaagctcacg 12249547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 30623344 - 30623293
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcac 215  Q
    |||||||||| |||||||||| ||||||| ||| ||| ||||||||||||||    
T  30623344 cccagaccttgcatatattatgcattgtccttaccaactgagctaagctcac 30623293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 37405836 - 37405785
Alignment:
Q  171 cttacatatattatacattgtctttaacaattgagctaagctcacggaaact 222  Q
    ||||| |||||||||||||||| ||| |||  ||||||||||||||||||||    
T  37405836 cttacctatattatacattgtccttatcaaccgagctaagctcacggaaact 37405785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 17704062 - 17704012
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  17704062 cagaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 17704012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 28219919 - 28219857
Alignment:
Q  159 tcgaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacggaaac 221  Q
    |||||||| |||||| || ||||||| |||| || ||||||| |||||||||||||| |||||    
T  28219919 tcgaacccggaccttgcaaatattatgcattatccttaacaactgagctaagctcacagaaac 28219857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 34461799 - 34461849
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||||||||||||||  || || || |||||||||||||    
T  34461799 cagaccttacatatattatacattgtccataccagttaagctaagctcacg 34461849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 7637722 - 7637755
Alignment:
Q  298 acttgtgcttttagagcacaaattagcatgaccc 331  Q
    |||||||||||||| |||||||||||||||||||    
T  7637722 acttgtgcttttagggcacaaattagcatgaccc 7637755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 8148440 - 8148489
Alignment:
Q  167 agaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    ||||||| ||||||||||||||||||  || ||||||||||||| |||||    
T  8148440 agaccttgcatatattatacattgtccataccaattgagctaagatcacg 8148489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 16843538 - 16843587
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    ||||| |||||||||||||||||| ||| |||| ||| ||||||||||||    
T  16843538 accttgcatatattatacattgtccttatcaatcgagttaagctcacgga 16843587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 19778112 - 19778063
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||| |||||||||| ||||||| ||| ||| ||||||||||||||||    
T  19778112 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgg 19778063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 444460 - 444416
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagct 212  Q
    |||||| |||||||||| ||||||| ||| |||||||||||||||    
T  444460 gaccttgcatatattatgcattgtccttaccaattgagctaagct 444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 16081357 - 16081305
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| ||||| ||| |||||||||||||| ||| ||| |||||||||||||||    
T  16081357 cccaaaccttgcatgtattatacattgtccttagcaactgagctaagctcacg 16081305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24687826 - 24687782
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagct 212  Q
    ||||||||||||||||| |||||| | || |||||||||||||||    
T  24687826 gaccttacatatattatgcattgtttatatcaattgagctaagct 24687782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 26914081 - 26914133
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||||||||| ||||||||| ||| || ||| ||| |||||||||||    
T  26914081 cccagaccttacatattttatacattatctatagcaactgaactaagctcacg 26914133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 39821935 - 39821883
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||||||| |||||||||| |||||||  || ||| |||||||||||||||    
T  39821935 cccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacg 39821883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 3195 - 3140
Alignment:
Q  161 gaacccagaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||| |||||||| ||||||||||  |||||||||| ||| |||||||||||||||    
T  3195 gaactcagaccttgcatatattatgtattgtctttaccaactgagctaagctcacg 3140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 18333 - 18290
Alignment:
Q  175 catatattatacattgtctttaacaattgagctaagctcacgga 218  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||    
T  18333 catatattatacattgtccttaccaactgagctaagctcacgga 18290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 5850 - 5903
Alignment:
Q  164 cccagaccttacatatattatacattgtctttaacaattgagctaagctcacgg 217  Q
    |||||||||||||||||||||||||| |  ||  ||| ||||||||||||||||    
T  5850 cccagaccttacatatattatacattattcttttcaactgagctaagctcacgg 5903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 189987 - 190032
Alignment:
Q  169 accttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  189987 accttacatatattatgcattgtcttcaacaactgagctaaactca 190032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 35227 - 35179
Alignment:
Q  166 cagaccttacatatattatacattgtctttaacaattgagctaagctca 214  Q
    ||||||||||||||||||| |||||||| ||  || |||||||||||||    
T  35227 cagaccttacatatattatgcattgtctatactaactgagctaagctca 35179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 56831 - 56783
Alignment:
Q  168 gaccttacatatattatacattgtctttaacaattgagctaagctcacg 216  Q
    |||||| ||||||||||||||||||  || ||| |||||||||||||||    
T  56831 gaccttgcatatattatacattgtccataccaactgagctaagctcacg 56783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University