View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18075_high_9 (Length: 270)
Name: NF18075_high_9
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 21150792 - 21151035
Alignment:
| Q |
14 |
atatcttgtccattgctggcaacattaatgttagtaatcaagactaaacaaaacatgttttatttatattttagataacaattcagctagat-ttttaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
21150792 |
atatcttgtccattgctggcaacattaatgttagtaatcaagactaaacaaaacatgttttatttatattttagataacaattcagctagaaattttatt |
21150891 |
T |
|
| Q |
113 |
taaatcatatcttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21150892 |
taaattatatcttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaa |
21150991 |
T |
|
| Q |
213 |
agacagttaaggatgctttaggtgttggggacatagagtttgtt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21150992 |
agacagttaaggatgctttaggtgttggggacatagagtttgtt |
21151035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 21126089 - 21126220
Alignment:
| Q |
124 |
ttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaaagacagttaag |
223 |
Q |
| |
|
|||||||||| || | |||||||| ||||||| |||||| ||| | ||||||||||| |||||| | ||||||| | || |||||||||||| | |
|
|
| T |
21126089 |
ttgtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagg |
21126188 |
T |
|
| Q |
224 |
gatgctttaggtgttggggacatagagtttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
21126189 |
gatgctttaggtgttggggacatagactttgt |
21126220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 21146179 - 21146310
Alignment:
| Q |
124 |
ttgtaaattgtagcattatgacatcagaaagacatgtcatggagacttatgttatgacttttcaaatgtgatgaaacttttgaatgaaaagacagttaag |
223 |
Q |
| |
|
|||||||||| || | |||||||| ||||||| |||||| ||| | ||||||||||| |||||| | ||||||| | || |||||||||||| | |
|
|
| T |
21146179 |
ttgtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagg |
21146278 |
T |
|
| Q |
224 |
gatgctttaggtgttggggacatagagtttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
21146279 |
gatgctttaggtgttggggacatagactttgt |
21146310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University