View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18075_low_10 (Length: 249)
Name: NF18075_low_10
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_low_10 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 54396203 - 54396440
Alignment:
| Q |
12 |
aagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54396203 |
aagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattct |
54396302 |
T |
|
| Q |
112 |
tcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54396303 |
tcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttag |
54396402 |
T |
|
| Q |
212 |
ctctctcacaagctgttcttaatctcctcaaagctctt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54396403 |
ctctctcacaagctgttcttaatctcctcaaagctctt |
54396440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 23596950 - 23596755
Alignment:
| Q |
35 |
tcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagt |
134 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | |||||| || | |||||||| | || | ||||| || |
|
|
| T |
23596950 |
tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggt |
23596851 |
T |
|
| Q |
135 |
tgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttct |
230 |
Q |
| |
|
| || || ||||| || |||||||||||||||||||| || || || |||||||| || ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
23596850 |
agtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttct |
23596755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 23588098 - 23587897
Alignment:
| Q |
35 |
tcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagt |
134 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| |||||| || | |||||||| | |||| || || || |
|
|
| T |
23588098 |
tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcccgagtgatggt |
23587999 |
T |
|
| Q |
135 |
tgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaat |
234 |
Q |
| |
|
| || || ||||| || |||||||| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||| |
|
|
| T |
23587998 |
agtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaat |
23587899 |
T |
|
| Q |
235 |
ct |
236 |
Q |
| |
|
|| |
|
|
| T |
23587898 |
ct |
23587897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 8017801 - 8017586
Alignment:
| Q |
12 |
aagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattct |
111 |
Q |
| |
|
||||||||| ||||||||| |||| || ||||||||||| || | ||||||||||||||| |||||||| || || |||| |||||| || | ||| |
|
|
| T |
8017801 |
aagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacactttctgaacagatccatgttaagttcc |
8017702 |
T |
|
| Q |
112 |
tcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttag |
211 |
Q |
| |
|
|||||||| || | || || || | || ||||||| || ||||||||||||||||| || || || || || ||||| ||||| || |||||||| | |
|
|
| T |
8017701 |
tcaaatcttgcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcg |
8017602 |
T |
|
| Q |
212 |
ctctctcacaagctgt |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8017601 |
ctctctcacaagctgt |
8017586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 8102447 - 8102674
Alignment:
| Q |
12 |
aagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattct |
111 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||||| || | ||||||||||||||| |||||||| ||||| |||| |||||| || | ||| |
|
|
| T |
8102447 |
aagaacaacatcatgaactgtgctcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcc |
8102546 |
T |
|
| Q |
112 |
tcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttag |
211 |
Q |
| |
|
|||||||| || | || || || | || ||||||| || ||||||||||||||||| || || || || || || ||||| || || |||||||| | |
|
|
| T |
8102547 |
tcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcg |
8102646 |
T |
|
| Q |
212 |
ctctctcacaagctgttcttaatctcct |
239 |
Q |
| |
|
|||||||||| || ||||| |||||||| |
|
|
| T |
8102647 |
ctctctcacatgcggttctcaatctcct |
8102674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 39985553 - 39985638
Alignment:
| Q |
139 |
tagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagc |
224 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
39985553 |
tagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagc |
39985638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 12258787 - 12258732
Alignment:
| Q |
194 |
aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctctt |
249 |
Q |
| |
|
||||||||| ||| || || ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
12258787 |
aagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctctt |
12258732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University