View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18075_low_13 (Length: 234)
Name: NF18075_low_13
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 8704877 - 8704712
Alignment:
| Q |
42 |
catatgaagagaaagtggtgattgttcagagttcagaagctaaagcatgaatttgtaatggtggaaatagggaatagtatgtgtgagagttttgaggttg |
141 |
Q |
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| T |
8704877 |
catatgaagagaaagtggtgattgttcagagttcagaagctaaagcatgaatttgtaatggtggaaatag-------tatgtgtgagagttttgaggttg |
8704785 |
T |
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| Q |
142 |
atcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaactgtctagtact |
214 |
Q |
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| T |
8704784 |
atcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaattgtctagtact |
8704712 |
T |
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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 14372551 - 14372638
Alignment:
| Q |
131 |
ttttgaggttgatcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaactgtctagtactacct |
218 |
Q |
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| T |
14372551 |
ttttgaggttgatcataatatcataggctagttttggctttagctgaacaaaaacaaaacataggaaggaaactgtctactactacct |
14372638 |
T |
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