View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18075_low_14 (Length: 229)

Name: NF18075_low_14
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18075_low_14
NF18075_low_14
[»] chr3 (1 HSPs)
chr3 (139-229)||(53112766-53112856)
[»] scaffold0029 (1 HSPs)
scaffold0029 (161-229)||(55447-55515)
[»] chr4 (2 HSPs)
chr4 (161-229)||(10797573-10797641)
chr4 (109-167)||(51271503-51271561)
[»] chr5 (1 HSPs)
chr5 (166-229)||(15881622-15881685)
[»] chr8 (1 HSPs)
chr8 (166-229)||(10216599-10216662)
[»] scaffold0153 (1 HSPs)
scaffold0153 (109-167)||(35605-35663)
[»] chr1 (1 HSPs)
chr1 (112-167)||(22775004-22775059)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 53112766 - 53112856
Alignment:
Q  139 aattacacaatttcaataacaaatctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  53112766 aattacacaatttcaatgacaaatctcaaaatccaaccctcacaaccccaaatgaaattgattaaattactggaaacccagatcatgaatc 53112856  T

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Target: scaffold0029 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 55447 - 55515
Alignment:
Q  161 atctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatc 229  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55447 atctcaaaatccaactctcacaaccccaaatgaaattgattaaattactggaaacccatatcatgaatc 55515  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 10797573 - 10797641
Alignment:
Q  161 atctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatc 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10797573 atctcaaaatccaaccctcgcaaccccaaatgaaattgattaaattactggaaacccatatcatgaatc 10797641  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 51271503 - 51271561
Alignment:
Q  109 acagcaacatcaacagaacttgtattcatcaattacacaatttcaataacaaatctcaa 167  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  51271503 acagcaacaacaacaaaacttgtattcaacaattacacaatttcaataagaaatctcaa 51271561  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 15881685 - 15881622
Alignment:
Q  166 aaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  15881685 aaaatccaaccctcacaaccccaaatgaaattgattaaattactggaaacccagatcatgaatc 15881622  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 10216662 - 10216599
Alignment:
Q  166 aaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatc 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  10216662 aaaatccaaccctcacaaccccaagtgaaattgattaaattactggaaacccagatcatgaatc 10216599  T

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Target: scaffold0153 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 35663 - 35605
Alignment:
Q  109 acagcaacatcaacagaacttgtattcatcaattacacaatttcaataacaaatctcaa 167  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  35663 acagcaacaacaacaaaacttgtattcatcaattacacaatttcaataagaaatctcaa 35605  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 22775004 - 22775059
Alignment:
Q  112 gcaacatcaacagaacttgtattcatcaattacacaatttcaataacaaatctcaa 167  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  22775004 gcaacaacaacagaacttgtattcagcaattacacaatttcaataagaaatctcaa 22775059  T

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