View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18075_low_16 (Length: 222)
Name: NF18075_low_16
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 32669796 - 32669985
Alignment:
| Q |
18 |
gttaagtcagagactaacaagatcaaaaaagaaccatcaaattcaatctcagatagtagcaagaagaagtacaaaggagtaagaatgaggagttggggtt |
117 |
Q |
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| T |
32669796 |
gttaagtcagagactaacaagatcaaaaaagaaccatcaaattcaatctcagatagtagcaagaagaagtacaaaggagtaagaatgaggagttggggtt |
32669895 |
T |
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| Q |
118 |
catgggtatcagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttattcaactgcagaagctgcagctagagcctatg |
207 |
Q |
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| T |
32669896 |
catgggtatcagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttattcaactgcagaagctgcagctagagcttatg |
32669985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 24174001 - 24174130
Alignment:
| Q |
78 |
aagaagaagtacaaaggagtaagaatgaggagttggggttcatgggtatcagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttatt |
177 |
Q |
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| T |
24174001 |
aagaaaaaatacaaaggagtaagaatgagaagttggggttcttgggtatcagaaataagagcaccaaatcaaaaaacaagaatatggttaggttcttatt |
24174100 |
T |
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| Q |
178 |
caactgcagaagctgcagctagagcctatg |
207 |
Q |
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| T |
24174101 |
caactgcagaagctgctgcaagagcctatg |
24174130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 5681527 - 5681575
Alignment:
| Q |
127 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttctta |
175 |
Q |
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| T |
5681527 |
cagagattagagaaccaaacaaaagatcaagaatttggttaggttctta |
5681575 |
T |
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