View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18075_low_3 (Length: 527)

Name: NF18075_low_3
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18075_low_3
NF18075_low_3
[»] chr5 (5 HSPs)
chr5 (16-83)||(30773302-30773368)
chr5 (166-225)||(30772697-30772756)
chr5 (231-287)||(30772611-30772667)
chr5 (455-495)||(30770815-30770855)
chr5 (16-51)||(27298596-27298631)
[»] chr6 (2 HSPs)
chr6 (157-222)||(16263911-16263976)
chr6 (155-222)||(16242095-16242162)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 30773368 - 30773302
Alignment:
Q  16 acaataatttttatttaaacgtgattttgcataaaatattattgattcctccttccatcaaaacccaa 83  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  30773368 acaataatttttatttaaacgtgattttgcataaaatatt-tttattcctccttccaccaaaacccaa 30773302  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 30772756 - 30772697
Alignment:
Q  166 agttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgatatt 225  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  30772756 agttggttatcattaaaggatgatttagtaattttattaatagaaaagaacaattatatt 30772697  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 30772667 - 30772611
Alignment:
Q  231 actcatcttttccattgaaaatttccaccggtcattatccatacactctcctctcta 287  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  30772667 actcatcttttccattgaaaatttccacctgtcatattccatacactctcctctcta 30772611  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 495
Target Start/End: Complemental strand, 30770855 - 30770815
Alignment:
Q  455 gattagtgttgttatctatacctggcgctgattgtgcttgt 495  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  30770855 gattagtgttgttatctatacctggtgctgattgtgcttgt 30770815  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 27298596 - 27298631
Alignment:
Q  16 acaataatttttatttaaacgtgattttgcataaaa 51  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27298596 acaataatttttatttaaatgtgattttgcataaaa 27298631  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 16263976 - 16263911
Alignment:
Q  157 acacttttaagttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgat 222  Q
    ||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||| ||||    
T  16263976 acacttttaagttagttattagtaaaggataatttagtaattttgttaatagaaaagaacattgat 16263911  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 16242162 - 16242095
Alignment:
Q  155 acacacttttaagttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgat 222  Q
    ||||||||||||||| || || | |||||  | | |||||||||||||||||||||||||||| ||||    
T  16242162 acacacttttaagttagtaattagtaaagattaatttagtaattttgttaatagaaaagaacattgat 16242095  T

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