View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18075_low_5 (Length: 446)

Name: NF18075_low_5
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18075_low_5
NF18075_low_5
[»] chr4 (4 HSPs)
chr4 (18-311)||(52528621-52528931)
chr4 (216-315)||(26720573-26720673)
chr4 (145-223)||(52525578-52525656)
chr4 (134-191)||(26720680-26720737)
[»] chr7 (1 HSPs)
chr7 (19-244)||(37978765-37979007)
[»] chr8 (1 HSPs)
chr8 (18-311)||(13863325-13863628)
[»] chr1 (4 HSPs)
chr1 (216-315)||(45118216-45118316)
chr1 (30-113)||(2983719-2983802)
chr1 (134-191)||(45118152-45118209)
chr1 (156-216)||(2983599-2983659)
[»] chr2 (2 HSPs)
chr2 (216-315)||(2985721-2985821)
chr2 (134-191)||(2985828-2985885)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 52528621 - 52528931
Alignment:
Q  18 accttgagccctaaattctccttagcgagcattctcacggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcacatgcc 117  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  52528621 accttaagcccaaaattctccttagcgagcattctcacggtggtcgccgcttctcgccgcttcaccgaatcatcttcctcatgcaaatccttctcatgcc 52528720  T
Q  118 gcttcagttcctccaa-----------------ccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccgattttacatt 200  Q
    |||||||||||||| |                 ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  52528721 gcttcagttcctccgatgcttcttccttcttctccgcctccgcacctgtctccacctccgccatgttcagaagatcggaaagcttctccaatttcacatt 52528820  T
Q  201 cagttttgaggtttgattcggtttcacattcacatttgggtatcagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaatg 300  Q
    | |||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  52528821 cggtttcgagatttgattcggtttcacattcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaatg 52528920  T
Q  301 acaatagagaa 311  Q
    |||||||||||    
T  52528921 acaatagagaa 52528931  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 26720673 - 26720573
Alignment:
Q  216 attcggtttcacattcacatttgggtatcagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaa-aaaatgacaatagagaagga 314  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| | |||||||    
T  26720673 attcggcttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaacaaagaagga 26720574  T
Q  315 t 315  Q
    |    
T  26720573 t 26720573  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 52525578 - 52525656
Alignment:
Q  145 tctgtctccacctccgccatgttcaaaagatcggaaagcttctccgattttacattcagttttgaggtttgattcggtt 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||| ||||||||||||||||||||    
T  52525578 tctgtctccacctccgccatgttcagaagatcggaaagcttctccaatgtcacattcaattttgaggtttgattcggtt 52525656  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 26720737 - 26720680
Alignment:
Q  134 ccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccga 191  Q
    ||||||||  |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  26720737 ccgcctccacatctgtctccacctccgcaatgttcaaaagatcagaaagcttctccga 26720680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 37979007 - 37978765
Alignment:
Q  19 ccttgagccctaaattctccttagcgagcattctcacggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcacatgccg 118  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37979007 ccttgagcccaaaattctccttagcgagcattctcatggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcacatgccg 37978908  T
Q  119 cttcagttcctccaa-----------------ccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccgattttacattc 201  Q
    ||||||||||| |||                 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37978907 cttcagttccttcaatgtttcttccttcttctccgcctccgcatctgtctccacctccgccatgttcagaagatcggaaagcttctccgattttacattc 37978808  T
Q  202 agttttgaggtttgattcggtttcacattcacatttgggtatc 244  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  37978807 agttttgaggtttgattcggtttcatattcacatttgggtatc 37978765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 13863325 - 13863628
Alignment:
Q  18 accttgagccctaaattctccttagcgagcattctcacggtggtcgcag----------cttctcgccgcttcaacgaaacatcttcctcatgcaaatcc 107  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||          ||||||||||||||| |||| ||||||||||||||||||||    
T  13863325 accttaagcccaaaattctccttagcaagcattctcacggtggtcgcagtttctcgcagcttctcgccgcttcaccgaatcatcttcctcatgcaaatcc 13863424  T
Q  108 ttcacatgccgcttcagttcctccaaccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccgattttacattcagtttt 207  Q
    |||||||||||||||||||||||| |  || ||    |   ||||| ||||||||||||||| ||||||||||||||||||| |||| |||||| ||||     
T  13863425 ttcacatgccgcttcagttcctccgat-gcttcttccttcttctccgcctccgccatgttcagaagatcggaaagcttctccaatttcacattcggtttc 13863523  T
Q  208 gaggtttgattcggtttcacattcacatttgggtatcagagagagtagatgggaaggaaaggtgggttgggaaattgagaagggg-aaaaaatgacaata 306  Q
    ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||     
T  13863524 gagatttgattcggtttcacattcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaatt 13863623  T
Q  307 gagaa 311  Q
    |||||    
T  13863624 gagaa 13863628  T

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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 45118216 - 45118316
Alignment:
Q  216 attcggtttcacattcacatttgggtatcagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaagga 314  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  45118216 attcggtttcacattcgcatttgggtatcagataaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaagtgacaatagagaagga 45118315  T
Q  315 t 315  Q
    |    
T  45118316 t 45118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 2983802 - 2983719
Alignment:
Q  30 aaattctccttagcgagcattctcacggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  2983802 aaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca 2983719  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 45118152 - 45118209
Alignment:
Q  134 ccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccga 191  Q
    ||||||||  |||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  45118152 ccgcctccacatctgtctccacctccgcaatgttcagaagattagaaagcttctccga 45118209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 2983659 - 2983599
Alignment:
Q  156 ctccgccatgttcaaaagatcggaaagcttctccgattttacattcagttttgaggtttga 216  Q
    |||||||||||| | ||||||||| || ||||||||||| |||||| ||||||| ||||||    
T  2983659 ctccgccatgttaagaagatcggagagtttctccgatttcacattcggttttgaagtttga 2983599  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 2985821 - 2985721
Alignment:
Q  216 attcggtttcacattcacatttgggtatcagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaagga 314  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2985821 attcggtttcacattcgcatttgggtatcagataaagtagatgggaaggaaacatggattgggaaattgagaaggggaaaaaagtgacaatagagaagga 2985722  T
Q  315 t 315  Q
    |    
T  2985721 t 2985721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 2985885 - 2985828
Alignment:
Q  134 ccgcctccgaatctgtctccacctccgccatgttcaaaagatcggaaagcttctccga 191  Q
    ||||||||  |||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  2985885 ccgcctccacatctgtctccacctccgcaatgttcagaagattagaaagcttctccga 2985828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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