View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18075_low_8 (Length: 306)
Name: NF18075_low_8
Description: NF18075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18075_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 43986294 - 43986021
Alignment:
| Q |
18 |
gtagggcagtgatattcgaagattttgatgataatttgaataaactcgaagctcgacgcagcacggagatgataactgttaactgtttgaatccagagga |
117 |
Q |
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| T |
43986294 |
gtagggcagtgatattcgaagattttgatgaaaatttgaataaactcgaagctcgacgcagcacggagatgataactgttaactgtttgaatccagagga |
43986195 |
T |
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| Q |
118 |
ttttcgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagca |
217 |
Q |
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| T |
43986194 |
ttttcgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagca |
43986095 |
T |
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| Q |
218 |
ggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaacacaacgctgaagag |
291 |
Q |
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| T |
43986094 |
ggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaacacaacgctgaagag |
43986021 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 35206491 - 35206370
Alignment:
| Q |
122 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
221 |
Q |
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|||||||| ||||| || ||||||||||| ||||| ||||| ||||| || || ||||| ||| | | | |||||||| | |||| |||||||||||| |
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| T |
35206491 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
35206392 |
T |
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| Q |
222 |
acaaaacatgccctaaaacagg |
243 |
Q |
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| T |
35206391 |
acatgacatgtccaaaaacagg |
35206370 |
T |
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