View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18076_high_10 (Length: 300)
Name: NF18076_high_10
Description: NF18076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18076_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29138116 - 29137826
Alignment:
| Q |
1 |
caagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacagcatcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29138116 |
caagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacagcatcctg |
29138017 |
T |
|
| Q |
101 |
taggttcacagtgaataatgtaaagaaacaattttgaatagattattggttatattaatcatcccaannnnnnnaatctgtccaaacatgtgtttctttc |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
29138016 |
taggttcacagtgaataatgtaaataaacaattttgaatagattattggttatattaataatcccaa-ttttttaatctgtccaaacatgtgtttctttc |
29137918 |
T |
|
| Q |
201 |
caaatctattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaagtaatcactttgcccctatgat |
292 |
Q |
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| T |
29137917 |
caaatccattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaagtaatcactttgcccctatgat |
29137826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14296169 - 14296070
Alignment:
| Q |
1 |
caagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacagcatcctg |
100 |
Q |
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||||||||||||| ||||| ||||| ||||||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||||||| |||||||| |
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| T |
14296169 |
caagatccatatcctcaatccctctcctcttcatagcttctcgaaatggagggaagtccttcacaacagcttcacattcggcatactccatggcatcctg |
14296070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34612860 - 34612762
Alignment:
| Q |
1 |
caagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacagcatcct |
99 |
Q |
| |
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|||||||||| |||||||| || ||||||||||| |||||| ||| || ||||| || |||||||| |||||||| ||||| ||| ||||||||| |
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| T |
34612860 |
caagatccatgtcttcaataccccttttcttcatagcctctataaaagggggaaaacttttaacaacagcctcgcattctgcatattcctcagcatcct |
34612762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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