View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18076_high_5 (Length: 351)
Name: NF18076_high_5
Description: NF18076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18076_high_5 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 48951026 - 48951364
Alignment:
| Q |
1 |
acgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48951026 |
acgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttt |
48951125 |
T |
|
| Q |
101 |
ataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48951126 |
ataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccactcatctgcacctacttccactcctatcccacgcacatgagttatga |
48951225 |
T |
|
| Q |
201 |
gcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48951226 |
gcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaa |
48951325 |
T |
|
| Q |
301 |
aaacgcgccaacagcaggatgccctaatataaccatctg |
339 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
48951326 |
aaacgcgccaacggcaggatgccctaatataaccatctg |
48951364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 48912599 - 48912479
Alignment:
| Q |
143 |
gttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtga |
242 |
Q |
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| T |
48912599 |
gttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtga |
48912500 |
T |
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| Q |
243 |
tcatcggaacccctacactaa |
263 |
Q |
| |
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|||| ||||||||| |||||| |
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| T |
48912499 |
tcattggaacccctgcactaa |
48912479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 48958086 - 48958181
Alignment:
| Q |
160 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccc |
255 |
Q |
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|||||| || ||||| || || || ||||||| |||||| | ||||||||||||||| || || | ||||||||||||||||||||| |||||||| |
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| T |
48958086 |
tgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccc |
48958181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 48974085 - 48974163
Alignment:
| Q |
185 |
cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaa |
263 |
Q |
| |
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| T |
48974085 |
cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaa |
48974163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 303
Target Start/End: Complemental strand, 1847 - 1547
Alignment:
| Q |
3 |
gaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttctttat |
102 |
Q |
| |
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||||||||| |||||| |||||||| | |||||| ||| | ||| ||||| | ||||||||||| | ||||||||||| || | |||||||||||| |
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| T |
1847 |
gaacaacatgtttagctatttttgcaatctcttgagctctacgtcttatttgaatggcttcatcaccactgtccatcaacctccttaaagccttctttat |
1748 |
T |
|
| Q |
103 |
aaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagc |
202 |
Q |
| |
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| ||||||| | | ||||| ||| || |||||||| | || | ||| ||||||||||| ||||||||||| |||||| |||| |||||||| | | |
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| T |
1747 |
acgatctctccctattagcttttccatgtcccgaaaagcaatggtaagccactcatctgcaccgacttccactccaatcccatgcacctgagttatcaac |
1648 |
T |
|
| Q |
203 |
ttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaaa |
302 |
Q |
| |
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| || || ||||| ||||||||||| || ||||| |||||||| |||| ||| |||||| |||||| || | |||||||||||||||||||||||||| |
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| T |
1647 |
gtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctcggttatagagttccacccacaatgtgtcaaaa |
1548 |
T |
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| Q |
303 |
a |
303 |
Q |
| |
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| |
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| T |
1547 |
a |
1547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 6723 - 6638
Alignment:
| Q |
185 |
cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc |
270 |
Q |
| |
|
||||| || ||||| | ||| |||||||| || || || | ||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
6723 |
cgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctc |
6638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 10731 - 10584
Alignment:
| Q |
159 |
ctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctac |
258 |
Q |
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||||||| |||||| | || ||||| ||||| || ||||| | |||||||||||| || || || | ||||| |||||||||||||| ||||||||| | |
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| T |
10731 |
ctgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgc |
10632 |
T |
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| Q |
259 |
actaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgc |
306 |
Q |
| |
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||||| |||||| || ||||||||||||||||||| |||||| |
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| T |
10631 |
actaaccgcctccacggtggaattccacccacaatgtgtcataaacgc |
10584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 12483704 - 12483601
Alignment:
| Q |
160 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
259 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| ||||||||| ||||||||||| || || |||| || ||||||||||||||||| |||| |||| || |
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| T |
12483704 |
tgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgca |
12483605 |
T |
|
| Q |
260 |
ctaa |
263 |
Q |
| |
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|||| |
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| T |
12483604 |
ctaa |
12483601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 309
Target Start/End: Complemental strand, 12590409 - 12590260
Alignment:
| Q |
160 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
259 |
Q |
| |
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|||||| ||||||||||| || ||| |||||| |||||| | |||||||||||| || || |||| || || ||||| ||||||||||||| || || |
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| T |
12590409 |
tgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagca |
12590310 |
T |
|
| Q |
260 |
ctaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgcgcc |
309 |
Q |
| |
|
|||| |||||| || || ||||| ||||||||||||| ||||||||| |
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| T |
12590309 |
ctaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcc |
12590260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 12641718 - 12641608
Alignment:
| Q |
160 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
259 |
Q |
| |
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|||||| || ||||| || |||| |||||| |||||| ||||||||||| |||||||| || | ||||| |||||||||||||| |||| |||| || |
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| T |
12641718 |
tgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgca |
12641619 |
T |
|
| Q |
260 |
ctaatagcctc |
270 |
Q |
| |
|
|||| |||||| |
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| T |
12641618 |
ctaacagcctc |
12641608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 13448339 - 13448415
Alignment:
| Q |
194 |
gttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc |
270 |
Q |
| |
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||||| || |||||||||||||| ||||| | ||| ||||||||||| ||||| ||||| || |||||| |||||| |
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| T |
13448339 |
gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc |
13448415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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