View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18076_high_9 (Length: 311)
Name: NF18076_high_9
Description: NF18076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18076_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 11685759 - 11685456
Alignment:
| Q |
1 |
tggatcaagagacgaggctagtaattataccacagttcctaaatatcttgaacagnnnnnnnctcagaagcttcttcttcttggaattcaagggtctgga |
100 |
Q |
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| T |
11685759 |
tggatcaagagacgaggctagtaattataccacagttcctaaatatcttgaacagaaaaaaactcagaagcttcttcttcttggaattcaagggtctgga |
11685660 |
T |
|
| Q |
101 |
actagcactatgtttaagcaggtatggcttttgtttcaaatgtgtaaaactatgttgcatgaatatgaatactatacgagtgtacaagtacttcaatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685659 |
actagcactatgtttaagcaggtatggcttttgtttcaaatgtgtaaaactatgttgcatgaatatgaatactatacgagtgtacaagtacttcaatata |
11685560 |
T |
|
| Q |
201 |
aatattaaaacacacataaacacatatataactaaacaatttttgtataaacatgactagtgtttaatattgattttcttataacatgattctgttctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685559 |
aatattaaaacacacataaacacatatataactaaacaatttttgtataaacatgactagtgtttaatattgattttcttataacatgattctgttctgt |
11685460 |
T |
|
| Q |
301 |
ggtg |
304 |
Q |
| |
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|||| |
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| T |
11685459 |
ggtg |
11685456 |
T |
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