View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18076_low_1 (Length: 282)
Name: NF18076_low_1
Description: NF18076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18076_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 12644037 - 12643771
Alignment:
| Q |
1 |
ttagatcttcgtctctacaccttcactataattcactttcaccaattccaattcttcatcaacattct-cggattcttcttcttctcaatagaacaattt |
99 |
Q |
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| T |
12644037 |
ttagatcttcatctctacaccttcagtataattcactttcaccaattccaattcttcatcaacattcttcggatgcttcttcttctcaatagaacaattt |
12643938 |
T |
|
| Q |
100 |
tattcaacatgaaataattcaaagggacgttggactcggacttcagcaaccggtaagcctctttgacagagaattcacaatcatgattatttctcaaag- |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
12643937 |
tattcaacataaaataattcaaagggacgttggactcggacttcagcaacaggtaagcctctttgacagagaattcacaatcatgattttttctccaagt |
12643838 |
T |
|
| Q |
199 |
tcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaaca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12643837 |
tcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaaca |
12643771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5734944 - 5734685
Alignment:
| Q |
1 |
ttagatcttcgtctctacaccttcactataattcactttcaccaattccaattcttcatcaacattct-cggattcttcttcttctcaatagaacaattt |
99 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
5734944 |
ttagatcttcatctctacaccttcactataattcactttcaccaattccaattcttcatcaacattcttcggattcttcttct---caatagaacaattt |
5734848 |
T |
|
| Q |
100 |
tattcaacatgaaataattcaaagggacgttggactcggacttcagcaaccggtaagcctctttgacagagaattcacaatcatgattatttctcaaag- |
198 |
Q |
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| T |
5734847 |
tattcaacatgaaataattcaaagggatgttggactcggacttcagcaaccggtaagtct-tttg---gagaattcacaatcatgattatttctccaagt |
5734752 |
T |
|
| Q |
199 |
tcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaaca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5734751 |
tcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacaccatgcaaacaaca |
5734685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2846246 - 2846196
Alignment:
| Q |
18 |
caccttcactataattcactttcaccaattccaattcttcatcaacattct |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2846246 |
caccttcactataattcactttcaccaattccaattcttcatcaacattct |
2846196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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