View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18076_low_2 (Length: 224)
Name: NF18076_low_2
Description: NF18076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18076_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 6355071 - 6354878
Alignment:
| Q |
13 |
aatatttgctaatgagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaagaggaagtattattgtatcgacaaaagtaata |
112 |
Q |
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| T |
6355071 |
aatatttgctaatgagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaagaggaagtattattgtatcgacaaaagtaata |
6354972 |
T |
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| Q |
113 |
atttgtattttcaagattaacaaataaagtgccaagactnnnnnnncttatttcatatgttttgaatgatcactctatttcataagggtttaac |
206 |
Q |
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| T |
6354971 |
atttgtattttcaagattaacaaataaagtgccaagactaaaaaaacttatttcatatgttttgaatgatcactctatttcataagggtttaac |
6354878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 3108234 - 3108191
Alignment:
| Q |
38 |
aacattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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| T |
3108234 |
aacattggttaaaatattaaaagaagtaagtttatataaaaaag |
3108191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 16316333 - 16316278
Alignment:
| Q |
26 |
gagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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| T |
16316333 |
gagtgactttagaacattggttgaaatattaaaagtagtaagtttatattaaaaag |
16316278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 4064122 - 4064181
Alignment:
| Q |
22 |
taatgagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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| T |
4064122 |
taatgagtgtctttaagatattggttaaagtattaaaagtagtaagtttgaattaaaaag |
4064181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 32072742 - 32072784
Alignment:
| Q |
39 |
acattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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| T |
32072742 |
acattggttaaaatactaaaagtagtaaatttatattaaaaag |
32072784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 45654927 - 45654879
Alignment:
| Q |
32 |
ctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaa |
80 |
Q |
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| T |
45654927 |
ctttagaacattggttaaaatactaaaagttgtaagtttataataaaaa |
45654879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 5580301 - 5580338
Alignment:
| Q |
44 |
ggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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| T |
5580301 |
ggttaaaatactaaaagtagaaagtttatattaaaaag |
5580338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 33027279 - 33027223
Alignment:
| Q |
25 |
tgagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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|||||||||||| |||||| |||||||||||||| ||||||||| ||| |||||| |
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| T |
33027279 |
tgagtgtctttaggacattgattaaaatattaaaataagtaagtttgtatcaaaaag |
33027223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 42486371 - 42486430
Alignment:
| Q |
22 |
taatgagtgtctttaaaacattggttaaaatattaaaagtagtaagtttatattaaaaag |
81 |
Q |
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||||||||||||||||||||||| ||||| | |||||| |||||| || |||||||||| |
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| T |
42486371 |
taatgagtgtctttaaaacattgattaaagtgttaaaattagtaaagttttattaaaaag |
42486430 |
T |
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