View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_high_14 (Length: 419)
Name: NF18077_high_14
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 4532063 - 4532321
Alignment:
| Q |
15 |
cacagaccagacacccacagctgcctctcaaaggactatgattgtcctccaagaacagttgtccatgcaaaggtacaacgaccaaatcctcaaacctcca |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4532063 |
cacagaccagacacccacaactgcctctcaaaggactatgattgtccttcaagaacagttgttcatgcaaaggtacaaggaccaaatcctcaaacctcca |
4532162 |
T |
|
| Q |
115 |
ttattggctcatatacatgggtcagatacattcactctgtgcaaatagtgtatcatcttatgccactcactgacttgagcgccatagcacgcatttgcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4532163 |
ttattggctcatatacatgggtcagatacattcactctatacaaatagtgtatcatcttatgtcactcactgacttgagcgccatagcacgcatttgcat |
4532262 |
T |
|
| Q |
215 |
acaaccctcgttcgcccgaagaaagaggtcacatatgatggagaagaaggcaaaagctt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4532263 |
acaaccctcgttcgcccgaagaaagaggtcacatatgatggagaagaaggcaaaagctt |
4532321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 49191626 - 49191551
Alignment:
| Q |
39 |
ctctcaaaggactatgattgtcctccaagaacagttgtccatgcaaaggtacaacgaccaaatcctcaaacctcca |
114 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| ||||||| | |||||||||| |||||| |||| ||||||||| |
|
|
| T |
49191626 |
ctctcaaaggaccatgattgtccttctagaacaattgtccacgtaaaggtacaaggaccaagtccttaaacctcca |
49191551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University