View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_high_16 (Length: 414)
Name: NF18077_high_16
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 38121383 - 38121789
Alignment:
| Q |
1 |
agagttctattaaaaatcaaatagcttgtctgaaaatactaaaataacattgccacagtaaagtttatgacagatttgcaatcaaacctgatgcacaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38121383 |
agagttctattaaaaatcaaatagcttgtctgaaaatactaaaataacattgccacagtaaagtttatgacagatttgcaatcaaacctgatgcaaaaga |
38121482 |
T |
|
| Q |
101 |
ttctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttcaaacatatagt |
200 |
Q |
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| T |
38121483 |
ttctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttcaaagatatagt |
38121582 |
T |
|
| Q |
201 |
gttctcctgcaatcacattgtagatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaatgtatattata |
300 |
Q |
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| T |
38121583 |
gttctcctgcaatcacattgtagatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaatgtatattaca |
38121682 |
T |
|
| Q |
301 |
gagaaggtgcaggtggcatactagcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgtatagattggcac |
400 |
Q |
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| T |
38121683 |
gagaaggtgcaggtggcatactagcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgtatagattggcac |
38121782 |
T |
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| Q |
401 |
ccctttg |
407 |
Q |
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| T |
38121783 |
ccctttg |
38121789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 38133556 - 38133703
Alignment:
| Q |
83 |
caaacctgatgcacaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaatttta |
182 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38133556 |
caaacctgatgcaaaagattctgatgggttagcataacaccttttggatttccagtagtaccacttgtgtatacaagagtagcaatgtcatcagatttta |
38133655 |
T |
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| Q |
183 |
ttgtttcaaacatatagtgttctcctgcaatcacattgtagatgagtt |
230 |
Q |
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| T |
38133656 |
ttgcttcaaacacatagtgcttccctgtaatcacattgtagatgagtt |
38133703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35107815 - 35107725
Alignment:
| Q |
84 |
aaacctgatgcacaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatc |
174 |
Q |
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|||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||| | |||||| ||||||||||| |
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| T |
35107815 |
aaacctgatgcagaaggttccgatgggtaagcataacaccttttggatttccagttgttccacttgtgtatataagagtggcaatgtcatc |
35107725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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