View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_high_17 (Length: 410)
Name: NF18077_high_17
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 47537350 - 47536954
Alignment:
| Q |
1 |
ccataatatatataacgtagaatgatatatgacacnnnnnnngccatacctgttggctaaaatatacgactgtgtatgataacgatttacgagtagtcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47537350 |
ccataatatatataacgtagaatgatatatgacacaaaaaaaggcatacctgttggctaaaatatacgactgtgtatgataacgatttacgagtagtcaa |
47537251 |
T |
|
| Q |
101 |
caaattctgcattgcaatagtatacaactttgatgctttacaatatggagttcaacgagtgaaaatcgacatccctaatagcgttttgagatgctagaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47537250 |
caaattctgcattgcaatagtatacaactttgatgctttacaatatggagttcaacgagagaaaatcgacatccctaatagcgttttgagatgctagaca |
47537151 |
T |
|
| Q |
201 |
ttgtgtacttatgcttgcggtcatggaacagcctcaatacaactgctgcagtttcttctatcgctttagcagtcacatctgtatatattagtgaaaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47537150 |
ttgtgtacttatgcttgcggtcatggaacagcctcaatacaactgctgcagtttcttctatcgctttagcagtcacatctgtatatattagtgaaaaaat |
47537051 |
T |
|
| Q |
301 |
ttagaatccatcagcattagtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttgaaatcgagta |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47537050 |
ttagaatccatcagcattagtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttgaaatcgagta |
47536954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 2821887 - 2821816
Alignment:
| Q |
319 |
agtttgaatgtaatattttgcaacaccctttgaactaatcaaaatcacagtttgaataataaaaatttgaaat |
391 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||| |||| |||||||| ||||||||||| |||| |||||| |
|
|
| T |
2821887 |
agtttgaaagtaatattttgcaactct-tttgaaacaatctaaatcacattttgaataatagaaatgtgaaat |
2821816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University