View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_high_18 (Length: 393)
Name: NF18077_high_18
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 31155028 - 31154683
Alignment:
| Q |
19 |
cggggtgcatctctgttttttattacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttc |
118 |
Q |
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| T |
31155028 |
cggggagcatctctgttttttattacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattttggtgtatgttgttc |
31154929 |
T |
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| Q |
119 |
ccaaagttcttcgtcacacatgttcacgtttgtggtggataccttaggatcgagggaggcataacttgattccaatgaaactcctt------attcataa |
212 |
Q |
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| T |
31154928 |
ccaaagttcttcgtcacacatgttcacgtttgtggtggataccttgggatcgagggaggcataacttgattccaatgaaactccttattcttattcataa |
31154829 |
T |
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| Q |
213 |
tctctttgcaaacaaaaaatctatcttgattcccaaccttccaatcacggacggtcattgcaagaaacaaaaagcacattttgaataagttgttttagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31154828 |
tctctttgcaaacaaaaaatctatcttgattcccaaccttccaa--agtcacagtcattgcaagaaacaaaaagcacattttgaataagttgttttagaa |
31154731 |
T |
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| Q |
313 |
atctttgatccaatacaaccccaaaatacacttgtaagatgaggatta |
360 |
Q |
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| T |
31154730 |
atctttgatctaatacaaccccaaaatacacttgtaaggtgaggatta |
31154683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 41603182 - 41603231
Alignment:
| Q |
151 |
tggtggataccttaggatcgagggaggcataacttgattccaatgaaact |
200 |
Q |
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| T |
41603182 |
tggtggataccttgggatcgagggaggcataatttgattccggtgaaact |
41603231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 28125862 - 28125696
Alignment:
| Q |
64 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
163 |
Q |
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||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| ||||||||||||| |
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| T |
28125862 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttcgcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
28125763 |
T |
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| Q |
164 |
aggatcgagggaggcataacttgattccaatgaaactccttattcataatctctttgcaaacaaaaa |
230 |
Q |
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| T |
28125762 |
gggatcgagggaggcatatacggattcagatgaaactccttcttcataatctcttttcaaaccaaaa |
28125696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 44962371 - 44962432
Alignment:
| Q |
120 |
caaagttcttcgtcacacatgttcacgtttgtggtggataccttaggatcgagggaggcata |
181 |
Q |
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| T |
44962371 |
caaagttcttcgccacacacgttcacgtttatggtggataccttgggatcgagggaggcata |
44962432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 5377661 - 5377827
Alignment:
| Q |
64 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
163 |
Q |
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||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| ||||||||||||| |
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| T |
5377661 |
gatttcgtattcgatcccggcggtgctttttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
5377760 |
T |
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| Q |
164 |
aggatcgagggaggcataacttgattccaatgaaactccttattcataatctctttgcaaacaaaaa |
230 |
Q |
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| T |
5377761 |
ggtatcgagggaggcatatacggattcagatgaaactccttcttcataatctcttttcaaaccaaaa |
5377827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 52519543 - 52519709
Alignment:
| Q |
64 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
163 |
Q |
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||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| ||||||||||||| |
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| T |
52519543 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
52519642 |
T |
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| Q |
164 |
aggatcgagggaggcataacttgattccaatgaaactccttattcataatctctttgcaaacaaaaa |
230 |
Q |
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| ||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| |||| |
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| T |
52519643 |
ggaatcgagggaggcatatacggattcagatgaaactccttcttcataatctcttttcaaaccaaaa |
52519709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 17450143 - 17450267
Alignment:
| Q |
57 |
ttgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtgg |
156 |
Q |
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||||| |||||||||||| ||||| || || | ||||||| |||| | ||| |||||| ||||||||||| |||||| |||||||||| |||||| |
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| T |
17450143 |
ttgttcagattttgtattcgatcccggcggaatgatttctttaattccgttgtgtgttgtcgtcaaagttcttcaccacacacgttcacgtttatggtgg |
17450242 |
T |
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| Q |
157 |
ataccttaggatcgagggaggcata |
181 |
Q |
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||||||| ||||||||||||||||| |
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| T |
17450243 |
ataccttgggatcgagggaggcata |
17450267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 6790471 - 6790570
Alignment:
| Q |
145 |
cgtttgtggtggataccttaggatcgagggaggcataacttgattccaatgaaactccttattcataatctctttgcaaacaaaaaatctatcttgattc |
244 |
Q |
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||||||||||||||||||| ||||||||||||||||| | ||||||| || |||| | |||| ||||| ||| ||||| | || ||||||||||||| |
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| T |
6790471 |
cgtttgtggtggataccttgggatcgagggaggcatatcctgattccggtgtaactttctcttcacaatctgttttcaaactacaactctatcttgattc |
6790570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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