View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_high_20 (Length: 391)
Name: NF18077_high_20
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 48020941 - 48020562
Alignment:
| Q |
17 |
aactacaaccaatactcaaaa-gataattgaaaatgagacaacatgcaaagattgtgaacaatggacatgattatattggcatcaatattctacgtttgg |
115 |
Q |
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| T |
48020941 |
aactacaaccaatactcaaaaagataattgaaaatgagacaacatgcaaagattgtgaacaatggacatgattatattggcatcaatattctacgtttgg |
48020842 |
T |
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| Q |
116 |
tgttccaacaattgaccatttgacccttgtaagaacaaa-----------------acaacataggattattaaggattaaggattcaggacaatagnnn |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | || | |
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| T |
48020841 |
tgttccaacaattgaccatttgacccttgtaagaacaaattaatccaacaaacaaaacaacataggattattaaggattaagga--caatagaaaaagac |
48020744 |
T |
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| Q |
199 |
nnnncaaagaagtagtgggagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttatagtcaca |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020743 |
aaaacaaagaagtagtggtagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttatagtcaca |
48020644 |
T |
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| Q |
299 |
acgttcctgccaacttcctcatcatttccactctttctctctctagaaaatagtacactcaccttctttttattctctgctc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020643 |
acgttcctgccaacttcctcatcatttccactctttctctctctagaaaatagtacactcaccttctttttattctctgctc |
48020562 |
T |
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