View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_high_30 (Length: 332)
Name: NF18077_high_30
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 52180243 - 52180540
Alignment:
| Q |
14 |
gattattctcataatgtcatatttatggctggagttttcacaatcgcttcaagtgttggctatattgttctctacgttggtttgttcagtggtgtatggg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52180243 |
gattattctcataatgtcatatttatggctggagttttcacaatcgcttcaagtgttggctatattgttctctacgttggtttgttcagtggtttatggg |
52180342 |
T |
|
| Q |
114 |
taccgattttggacacaaattgggttacctagtaaaacatttaaattttcagggaattttcatatggtgttgtttggttgcaatttggcgtgccatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52180343 |
taccgattttggacacaaattgggttacctagtaaaacatttaaattttcagggaattttcatatggtgttgtttggttgcaatttggcgtgccatgttg |
52180442 |
T |
|
| Q |
214 |
gagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttttttaaatgttttaattctttggcatttcttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52180443 |
gagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttttttaaatgttttaattctttggcatttcttg |
52180540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 7297125 - 7297245
Alignment:
| Q |
168 |
aattttcatatggtgttgtttggttgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatggg |
267 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | | || |||||||| || |||||||| |||| | |||||| || |||||||||||||| || |||| |
|
|
| T |
7297125 |
aattttcagatggtgttgttgggatgcaaccttgtttgtcatgttggtgttcttttgttacatttatttagaggtgggtgtaatggaattggtgcttggg |
7297224 |
T |
|
| Q |
268 |
tttttaattcttttttaaatg |
288 |
Q |
| |
|
|||| |||||| |||| |||| |
|
|
| T |
7297225 |
ttttcaattctattttgaatg |
7297245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University