View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_high_53 (Length: 236)
Name: NF18077_high_53
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_53 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2178887 - 2178668
Alignment:
| Q |
1 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaacacatggtgggtctcttccataacaccaaaaaatgcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178887 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaacacatggtgggtctcttccataacaccaaaaaatgcac |
2178788 |
T |
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| Q |
101 |
aaactctttttcttcaacaacctcaaaaaccatatccacactccaaaaccagcctcatacatattcaacaaccacttcacaacacaatccaaaaatctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178787 |
aaactctttttcttcaacaacctcaaaaaccatatccacactccaaaaccagcctcatacatattcaacaaccacttcacaacacaatccaaaaatctcc |
2178688 |
T |
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| Q |
201 |
ctaacatagacacaatcaca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2178687 |
ctaacatagacacaatcaca |
2178668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32694617 - 32694540
Alignment:
| Q |
1 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaacacatggtgggtctct |
78 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||||||| ||||| ||||||||||||| |||| |||| |
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| T |
32694617 |
taggatccaaaacccttcctgaatttcctcaattccaattccctttcatacattctatcaaacacatgatgggcctct |
32694540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32694718 - 32694655
Alignment:
| Q |
1 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaaca |
64 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||||||| ||||| ||||||||| |
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| T |
32694718 |
taggatccaaaacccttcctgaatttcctcaattccaattccctttcatacattctatcaaaca |
32694655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43001 - 42925
Alignment:
| Q |
1 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaacacatggtgggtctct |
78 |
Q |
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|||||||||||||||||| | ||||| || ||||||||||||||| || | ||| ||||||||||||| ||||||||| |
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| T |
43001 |
taggatccaaaacccttcccgaatttcctcaattccaattcccttccata-attctatcaaacacatgatgggtctct |
42925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30858601 - 30858524
Alignment:
| Q |
1 |
taggatccaaaacccttctcaaattttcttaattccaattccctttcacacattttatcaaacacatggtgggtctct |
78 |
Q |
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||||||||||||| |||| ||||| || |||||||||||||||||| ||||| ||||||||||||| |||| |||| |
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| T |
30858601 |
taggatccaaaacgcttcctgaatttcctcaattccaattccctttcatacattctatcaaacacatgatgggcctct |
30858524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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