View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_high_6 (Length: 528)
Name: NF18077_high_6
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Original strand, 41269863 - 41270361
Alignment:
| Q |
13 |
aatataattttctaagaaataaaggaagaaggcaaataaggatgtgacaggattaaaaatagtaaatcatatcttatagaaatactaaatcaaggtctca |
112 |
Q |
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| T |
41269863 |
aatataattttctaagaaataaaggaagaaggcaaataaggatgtgacaggattaaaaatagtaaatcatatcttatagaaatactaaatcaaggtctca |
41269962 |
T |
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| Q |
113 |
catgaatggcacagaaaacctaacatagaaagtgtggggaaacaaataccatgatactagtaggtagtagcagtgtagcacccaactaatgaaaagttag |
212 |
Q |
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| T |
41269963 |
catgaatggcacaaaaaacctaacatagaa-gtgtggggaaacaaatactatgatactagtaggtagtagcagtgtagcacccaactaatgaaaagttag |
41270061 |
T |
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| Q |
213 |
aaagtgacagtaatttattttttatttatgaaaggttaaactatatactaatactagtaagtaacgttcaaaaagctgtaactattatatgaatcataga |
312 |
Q |
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| T |
41270062 |
aaagtgacagtaatttattttttatttatgaaaggttaaactatatactaatactagtaagtaacgttcaaaaagctgtaactattatatgaatcataga |
41270161 |
T |
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| Q |
313 |
aatgattattaatactatatagttggtttacactgacattaaataatgtgtcagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagt |
412 |
Q |
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| T |
41270162 |
aatgattattaatactatatagttggtttacactgacattaaataatgtgtcagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagt |
41270261 |
T |
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| Q |
413 |
gacacaacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacagat |
512 |
Q |
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| T |
41270262 |
gacacaacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacagat |
41270361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 352 - 509
Target Start/End: Complemental strand, 27684311 - 27684154
Alignment:
| Q |
352 |
taaataatgtgtcagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggt |
451 |
Q |
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| T |
27684311 |
taaacaatgtgacagattcctagtggatgatatgcccataaggaggtacccaaggaagagtgatgcaacatttccactaagaccaatgtgggtttatggg |
27684212 |
T |
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| Q |
452 |
tcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattaca |
509 |
Q |
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| T |
27684211 |
tctatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattaca |
27684154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 501
Target Start/End: Original strand, 40871884 - 40872020
Alignment:
| Q |
365 |
agatttcttgtggatgatgtgccaataaggaggtacccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggatg |
464 |
Q |
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| T |
40871884 |
agatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatg |
40871983 |
T |
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| Q |
465 |
cttcatcatgggcaacagaagatggaaaatacaaagc |
501 |
Q |
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| T |
40871984 |
catctgcatgggctacagagaatggaaaatacaaagc |
40872020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 364 - 507
Target Start/End: Complemental strand, 21083916 - 21083773
Alignment:
| Q |
364 |
cagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggat |
463 |
Q |
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| T |
21083916 |
cagatttttagtagatgatgtgcccataagaaggtatcctaggaaaagtgatgccacctaccctacaagaccaatgtatctctatggatcaatttgggat |
21083817 |
T |
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| Q |
464 |
gcttcatcatgggcaacagaagatggaaaatacaaagctgatta |
507 |
Q |
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| T |
21083816 |
gcatcttcttgggcaacagaagatggaaaatataaagctgatta |
21083773 |
T |
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