View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_high_7 (Length: 526)
Name: NF18077_high_7
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 11312393 - 11311895
Alignment:
| Q |
13 |
gattattcttatcagtctgaagattttccccaggcacttgctgctcttgctctaaatgacacaaaggaccagtccttcattgtagattctggagctacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312393 |
gattattcttatcagtctgaagattttccccaggcacttgctgctcttgctctaaatgacacaaaggaccagtccttcattgtagattctggagctacat |
11312294 |
T |
|
| Q |
113 |
cccacatgatcaatgatgcaggtaatttatcctatgttaagacttatcatggaaatgatgtaatctatgtgggtgatggaaataacataccaataacaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312293 |
cccacatgatcaatgatgcaggtaatttatcctatgttaagccttatcatggaaatgatgtaatctatgtgggtgatggaaataacataccaataacaca |
11312194 |
T |
|
| Q |
213 |
tactggtgatgtgaatgttgttacatctaatggaaacttaaaattaaaagatgttctggtggttccagacttaaagaagaatttgctttctgttggaaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312193 |
tactggtgatgtgaatgttgttacatctaatggaaacttaaaattaaaagatgttctggtggttccagacttaaagaagaatttgctttctgttggaaaa |
11312094 |
T |
|
| Q |
313 |
tttgtgtctgataaccaatgcatttttgaattgacttctgctggatttgttattaaggatcaaagtcaaaagatgatagcgagggggcataagaaagaac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11312093 |
tttgtgtctgataaccaatgcatttttgaattcacttcttctggatttgttattaaggatcaaagtcaaaagatgatagcgagggggcataagaaaggac |
11311994 |
T |
|
| Q |
413 |
aactgtacacacttgatggaggctatcaagaggctcttagtgcaataagaggaggttccccttccacagtttggcatcaaagacttggacatcaaaatt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11311993 |
aactgtacacacttgatggaggctatcaagaggctcttagtgcaataagaggaggttccccttccacagtttggcatcaaagacttggacatccaaatt |
11311895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University