View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_1 (Length: 737)
Name: NF18077_low_1
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 721
Target Start/End: Original strand, 54726445 - 54727128
Alignment:
| Q |
17 |
agacccattagaaggaacaataaagaaaataagacttgaaaattctgacataaactttttgttttggtttcttttaacggctcagacataagctagaact |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54726445 |
agacccattagaaggaacaataaagaaaataagacttgaaaattctgacataaactttttgttttggttt---------------------gctagaact |
54726523 |
T |
|
| Q |
117 |
tttatgacgtagggcctgtttggattgatttatttgagcttatttacaagcgtaatcacaagtgtttgttagagctaatggaaattgcttatgacatgcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54726524 |
tttatgacgtagggcctgtttggattgatttatttgagcttatttacaagcgtaatcacaagtgtttgttagagctaatggaaattgcttatgacatgcc |
54726623 |
T |
|
| Q |
217 |
aataagttgttgtcagcttattatgaaaacagtttatagcctatatgaaaatagttaagagtttattttatttgttatagaaatgacttatgtgataaat |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54726624 |
aataagttgttgtcagcttattatgaaaacagtttatagcctatatgaaaatagttaagagtttattttatttgttatagaaatgaattatgtgataaat |
54726723 |
T |
|
| Q |
317 |
gcttaatctataagttcttgattaagctttttatcaaaacagggccatgagaaagtggatagtatgagaatatggatcccacgtgtagtatttttcacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54726724 |
tcttaatctataagttcttgattaagctttttatcaaaacagggccataagaaagtggatagtatgagaatatggatcccacgtgtagtattttttacaa |
54726823 |
T |
|
| Q |
417 |
gtatcacaatgaaggatataaattacctgagttggaggcttgagcacaatagaatttccagcaatgagtgctggagcaatttttgagacagcaagattga |
516 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54726824 |
gtatcataatgaaggatataaattacctgagttggaggcttgagcacaatagaatttccagcaatgagtgcaggagcaatttttgagacagcaagattga |
54726923 |
T |
|
| Q |
517 |
caggatagttaaaaggtggaatggctaagatcactcctaatgggatctgaaaatcaagtgcagctttcttagaccacatcgtcaaccaagcaaaacaaaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54726924 |
caggatagttaaaaggtggaatggctaagatcactcctaatgggatctgaaaatcaagtgcagctttcttagaccacatcgtcaaccaagcaaaacaaaa |
54727023 |
T |
|
| Q |
617 |
caataagataacacatgacatttcaccatgatcatttaatttacaattctttataagttactaagataattgaatgtaatgcagatataccacacccttg |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727024 |
caataagataacacatgacatttcaccatgatcatttaatttacaattctttataagttactaagataattgaatgtaatgcagatataccacacccttg |
54727123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 440 - 544
Target Start/End: Complemental strand, 3007587 - 3007483
Alignment:
| Q |
440 |
tacctgagttggaggcttgagcacaatagaatttccagcaatgagtgctggagcaatttttgagacagcaagattgacaggatagttaaaaggtggaatg |
539 |
Q |
| |
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|||||| |||||||| || || ||||| || ||||||||||| | |||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
3007587 |
tacctgggttggaggtttaaggacaatggagtttccagcaataatagctggaccaatctttgaaacagctagattaacaggatagttaaaaggtggaatg |
3007488 |
T |
|
| Q |
540 |
gctaa |
544 |
Q |
| |
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||||| |
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| T |
3007487 |
gctaa |
3007483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 48830129 - 48830164
Alignment:
| Q |
237 |
ttatgaaaacagtttatagcctatatgaaaatagtt |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
48830129 |
ttatgaaaacagtttatagcttatatgaaaatagtt |
48830164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 15558369 - 15558336
Alignment:
| Q |
126 |
tagggcctgtttggattgatttatttgagcttat |
159 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
15558369 |
tagggcctgtttggattgagttatttgagcttat |
15558336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 43456819 - 43456877
Alignment:
| Q |
302 |
acttatgtgataaatgcttaatctataagttcttgattaagctttttatcaaaacaggg |
360 |
Q |
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|||||||||||||||||||| |||||||| ||| |||||| |||||||| |||||||| |
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| T |
43456819 |
acttatgtgataaatgcttatgctataagtgcttaattaagttttttatcgaaacaggg |
43456877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 1830197 - 1830160
Alignment:
| Q |
126 |
tagggcctgtttggattgatttatttgagcttatttac |
163 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| |
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| T |
1830197 |
tagggcctgtttggattgacttatttgagtttatttac |
1830160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 27667 - 27616
Alignment:
| Q |
187 |
agagctaatggaaattgcttatgacatgccaataagttgttgtcagcttatt |
238 |
Q |
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|||||| |||||||| |||||||||||| | |||||||||| |||||||||| |
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| T |
27667 |
agagcttatggaaatagcttatgacatggctataagttgttttcagcttatt |
27616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 4420772 - 4420742
Alignment:
| Q |
133 |
tgtttggattgatttatttgagcttatttac |
163 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4420772 |
tgtttggattgatttatttgagcttatttac |
4420742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 19800369 - 19800402
Alignment:
| Q |
126 |
tagggcctgtttggattgatttatttgagcttat |
159 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
19800369 |
tagggcttgtttggattgatttatttgagcttat |
19800402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 11707197 - 11707164
Alignment:
| Q |
130 |
gcctgtttggattgatttatttgagcttatttac |
163 |
Q |
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||||||||||||||| |||||||||||||||||| |
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|
| T |
11707197 |
gcctgtttggattgacttatttgagcttatttac |
11707164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 25459542 - 25459575
Alignment:
| Q |
126 |
tagggcctgtttggattgatttatttgagcttat |
159 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
25459542 |
tagggtctgtttggattgatttatttgagcttat |
25459575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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