View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_10 (Length: 503)
Name: NF18077_low_10
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 41990590 - 41990097
Alignment:
| Q |
1 |
gatttgaaagagtgtagcatggagaacacccatttgttgaacatgtatcactatcgacaaagacgagtggtggggatgagagcatggagatggatggaaa |
100 |
Q |
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| T |
41990590 |
gatttgaaagagtgtagcatggagaacacccatttgttgaacatgtatcactatcgacaaagacgggtggtggggatgagagcatggagatggatggaaa |
41990491 |
T |
|
| Q |
101 |
taagatatgggggtgggtttttcaaggagacggttttcgacagttgaaatcaattttgtggatgattttgattggtctaacgaggaggaggtgtcattgt |
200 |
Q |
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| T |
41990490 |
taagatatgggggtgggttttttaaggagacggttttcgacaattgaaattaattttgtggatgattttgattggtctaacgaggaggaggtgtcattgt |
41990391 |
T |
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| Q |
201 |
tgaaaggaggaaggtgaa-------gatatcaatattgaataatctatgaatggcaagtacaaatgtcctgattttttgttatcgaataaagaaaataag |
293 |
Q |
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| T |
41990390 |
tgaaaggaggaaggagaaaggtgcagatatcaatattgaataatctatgaatggcaagtacaaatgtcctgattttttgttatcgaataaagaaaataag |
41990291 |
T |
|
| Q |
294 |
agtattttttcggccctggaagaaaggagtgatcatgaagatgttagggcaaaatattcgtgcaaagcttgaagacaagattgaagcaaatgcgggtgag |
393 |
Q |
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| T |
41990290 |
agaattttt-cggccctggaagaaaggagtgatcatgaagatgttagg-caaaatattcgtgcaaagcttgaagacaagattgaagcaaatgtgggtgag |
41990193 |
T |
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| Q |
394 |
aaatggagaaatcaacattgttgatctgagcaatgattattatttcgttactttctccaacaaagaatatcaagatcgtgcaatattagaagaaat |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990192 |
aaatggagaaatcaacattgttgatctgagcaatgattattattttgttactttctccaacaaagaatatcaagatcgtgcaatattagaagaaat |
41990097 |
T |
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