View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_11 (Length: 490)
Name: NF18077_low_11
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 5 - 474
Target Start/End: Original strand, 32597881 - 32598350
Alignment:
| Q |
5 |
actgaaatgaaatttagtatacaaactactaaagaaatcaattaaattcccaactacaattgcaacaaaaaataaattactcttcacatctaactttgac |
104 |
Q |
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| T |
32597881 |
actgaaatgaaatttagtatacaaactactaaagaaatcaattaaattcccaactacaattgcaacaaaaaataaattactcttcacatctaactttgac |
32597980 |
T |
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| Q |
105 |
ttatgatgtgtaccctattgatcacaatcacgacatgcttcaccatcaacagaaaatccaattcagccccacctcacgtttaattattctcaacagttga |
204 |
Q |
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| T |
32597981 |
ttatgatgtttaccctattgatcacaatcacgacatgcttcaccatcaacagaaaatccaattcagccccacctcacgtttaattattctcaacagttga |
32598080 |
T |
|
| Q |
205 |
acattgcaaataaaggactaagcttggcatgtgtcaagggtcaacatcatttatgtgtttgagtgcatacaaacatgcaacttgcaagtattagtctcaa |
304 |
Q |
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| T |
32598081 |
acattgcaaataaaggactaagcttggcatgtgtcaagggtcaacatcatgtatgtgtttgagtgcatacaaacatgcaacttgcaagtattagtctcaa |
32598180 |
T |
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| Q |
305 |
gtttttacaaaaggtccagaaccgcagtctagattgcaacattgtgagttgtgacatcaaactttttaattttaccaatcacgattttggtcataatagc |
404 |
Q |
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| T |
32598181 |
gtttttacaaaaggtccagaaccgcagtctagattgcaacattgtgagttgtgacatcaaactttttaattttaccaatcacgattttggtcataatagc |
32598280 |
T |
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| Q |
405 |
cacacttaaccagaattctccgcaataacaactatgaaacaccgaggatctcaacatgaccgcgatttaa |
474 |
Q |
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| T |
32598281 |
cacacttaaccagaattctccgcaataacaactatgaaacaccgaggatctcaacatgaccgcgatttaa |
32598350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 53 - 431
Target Start/End: Original strand, 32602365 - 32602734
Alignment:
| Q |
53 |
cccaactacaattgcaacaaaaaataaattactcttcacatctaactttgacttatgatgtgtaccctattgatcacaatcacgacatgcttcaccatca |
152 |
Q |
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||||||||||||| | ||| |||| |||||||| ||| |||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||| |||| |
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| T |
32602365 |
cccaactacaattaccacataaaagaaattacttttcgcatctaactttgacatatgatgtttaccctactgatcacgatcacgacatgcttcactatca |
32602464 |
T |
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| Q |
153 |
acagaaaatccaattcagcccca-cctcacgtttaattattctcaac-agttgaacattgcaaataaaggactaagcttggcatgtgtcaagggtcaaca |
250 |
Q |
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| T |
32602465 |
acaggatatccaattcatccccaccctcacatttaattcttatcaacaagttaaacattgcaaatagaggactaagcctggcatgcgtcgagtgttgaca |
32602564 |
T |
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| Q |
251 |
tcatttatgt----gtttgagtgcatacaaacatgcaacttgcaagtattagtctcaagtttttacaaaaggtccagaaccgcagtctagattgcaacat |
346 |
Q |
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| T |
32602565 |
tcatgtgtgtataagtttgagtgcataaaacaat--------caagtattagtttcaggtttataaaaaaggtccacaaccacagtctagattgtgacat |
32602656 |
T |
|
| Q |
347 |
tgtgagttgtgacatcaaactttttaattttaccaatcacgattttggtcataatagc--cacacttaaccagaattctccgcaata |
431 |
Q |
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| T |
32602657 |
tgtga--tg-----tcaaagtttt--agttttccgatcacgattatggtcataatagccacacacttaaccacaattctccgcaata |
32602734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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