View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_12 (Length: 485)
Name: NF18077_low_12
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 48670244 - 48670700
Alignment:
| Q |
16 |
atcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtagaattccatcca |
115 |
Q |
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| T |
48670244 |
atcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtagaattccatcca |
48670343 |
T |
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| Q |
116 |
cagtgtgttaagaaacacgctattgcaggatgaaccaaaaccttagtttgtggacaccatgtaacaaccaatcctttctcttttgtttcttctaagaatt |
215 |
Q |
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| T |
48670344 |
cagtgtgttaagaaacacgctattgcaggatgaaccaaaaccttagtttgtggacaccatgtaacaaccaatcctttctcttttgtttcttctaagaatt |
48670443 |
T |
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| Q |
216 |
tttcagaaagctgaactttttcagctccaatatcattactcttcatcacccagagaaaatatttgttactgtttttcaatgcatttgctatgctttgcat |
315 |
Q |
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| T |
48670444 |
tttcagacagctgaactttttcagccccaatatcattactcttcatcacccagagaaaatatttgttactgtttttcaatgcacttgctatgctttgcat |
48670543 |
T |
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| Q |
316 |
ttgtttttctgatnnnnnnntgagacttccgaatgaaatatatataactgaagatggtggcttttggttaagccattccatgcaagaatcttggggagtc |
415 |
Q |
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| T |
48670544 |
ttgtttttctgataaaaaaatgagacttccgaatgaaatatatataactgaagatggtagcttttggttaagccattccatgcaagaatcttggggagtc |
48670643 |
T |
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| Q |
416 |
cacatttcaattccaacgtcttgtttttgatcttgacctagtaatgaaggtggaact |
472 |
Q |
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| T |
48670644 |
cacatttcaattccaacgtcttgtttttgatcttgacctagtaatgaaggtggaact |
48670700 |
T |
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