View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_14 (Length: 447)
Name: NF18077_low_14
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 48411794 - 48411376
Alignment:
| Q |
12 |
acagaaccgtcacgaacctcttctccgaccctctctggttcaaacccgaaccgttcctctcccctaacttcgattccgaatcacacatctctcaacttcc |
111 |
Q |
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| T |
48411794 |
acagaaccgtcacgaacctcttctccgaccctctctggttcaaacccgaaccgttcctctcccctaacttcgattccgaatcatacatctctcaacttcc |
48411695 |
T |
|
| Q |
112 |
aaccttcgttcccttccacactctccgttcacaactcaacaactacctttcatccctaaatcaccaactcattcatcttatcaatcgcgattactctgat |
211 |
Q |
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| T |
48411694 |
aaccttcgttcccttccacactctccgttcacaactcaacaactacctttcatccctaaatcaccaactcattcatcttatcaatcgcgattactctgat |
48411595 |
T |
|
| Q |
212 |
ttcgctaatcttactgcaaacattgttgatgtggatgatgttgtggtacccgcttgtggagctgcgcgagaatattcagcagtttagagattctgctgat |
311 |
Q |
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| T |
48411594 |
ttcgctaatcttactgcaaacattgttgatgtggatgatgttgtggtacccgcttgtggagctgcgggagaatattcagcagtttagagattctgctgat |
48411495 |
T |
|
| Q |
312 |
atttctctttttgctattaacaatggtttgaagctgaaatctcaagctgcttccgctagagagactttggagtttcttctttattcgtttcatcttgttt |
411 |
Q |
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| T |
48411494 |
gtttctcttttttctattaacaatggtttgaagcagaaatctcaagctgcttccgctagagagactttggagtttcttctttattcgtttcatcttgttt |
48411395 |
T |
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| Q |
412 |
ctaaggtacgcaatgcttg |
430 |
Q |
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| T |
48411394 |
ctaaggtacgcaatgcttg |
48411376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 419
Target Start/End: Original strand, 42824684 - 42825049
Alignment:
| Q |
65 |
ttcctctcccctaacttcgattccgaatcacacatctctcaacttccaaccttcgttcccttccacactctccgttcacaactcaacaactacctttcat |
164 |
Q |
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|||||||||||| |||||||||||||||| |||| || |||| | ||||||||| || ||| |||||||||| || ||||||||||||| || || | |
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| T |
42824684 |
ttcctctcccctgacttcgattccgaatcctacatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgt |
42824783 |
T |
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| Q |
165 |
ccctaaatcaccaactcattcatcttatcaatcgcgattactctgatttcgctaatcttactgcaaacattgttgatgtggatgatgttgtggtac---- |
260 |
Q |
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| ||||||||| | |||||| |||| |||||||||||||| ||||||||| |||| | | | | || ||||||||||||||| | ||||| | |
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| T |
42824784 |
cgctaaatcacgagctcattgatctaatcaatcgcgattatgctgatttcgttaatttgagtacgaagcttgttgatgtggatgcggcggtggtgcggat |
42824883 |
T |
|
| Q |
261 |
-------ccgcttgtggagctgcgcgagaatattcagcagtttagagattctgctgatatttctctttttgctattaacaatggtttgaagctgaaatct |
353 |
Q |
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|||||||| ||| || | ||||| ||| | |||||||||| ||||| ||| |||| ||| ||||||| || ||||||||||||| |||| |
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| T |
42824884 |
gcgggcgccgcttgttgagttgagggagaagattgaacagtttagaggttctgttgacgtttcgcttgttgctataaagaatggtttgaagcaacgatct |
42824983 |
T |
|
| Q |
354 |
caagctgcttccgctagagagactttggagtttcttctttattcgtttcatcttgtttctaaggta |
419 |
Q |
| |
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|||||||||| || ||||||||||||||| |||||||| || | |||||| ||||||| |||||| |
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| T |
42824984 |
gaagctgcttctgccagagagactttggagcttcttcttgatacatttcatgttgtttccaaggta |
42825049 |
T |
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