View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_16 (Length: 417)
Name: NF18077_low_16
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 17107757 - 17107366
Alignment:
| Q |
19 |
ccgtccatagtaaaattaaatcatccttgtcaaataggtagcctttagggaataatgcacagtacccaaaacatctcttaagatcatatggaagcttttg |
118 |
Q |
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| T |
17107757 |
ccgtccatagtaaaattaaatcatccttgtcaaataggtagcctttagggaataatgcacagtacccaaaacatctcttaagatcatatggaagcttttg |
17107658 |
T |
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| Q |
119 |
ataacttaacatcaaagcagggacaattcgtctttctcctggtaagttccatataccgcttttcgatatctcactccagtccttgaaggatgaatgtacg |
218 |
Q |
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| T |
17107657 |
ataacttaacatcaaagcagggacaattcgtgtttctcctggtaagttccatataccgcttttcgatatctcactccagtccttgaaggatgaatgtacg |
17107558 |
T |
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| Q |
219 |
ctcaagagacgcccaattgcttccaaagctaaaggtaatccgttacatttcctcatgacatcttcggcaattaactcaaaaactcctgggccaatggtta |
318 |
Q |
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| T |
17107557 |
ctcaagagacgcccaattgcttccaaagctaaaggtaatccgttacatttcctcatgacatcttcggcaattaactcaaaaactcctgggccaatggtta |
17107458 |
T |
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| Q |
319 |
ttcgagaactctctagatttttgaatgcatgtttggaaaacaactcccatgcatgttcttcttctaatttctgtagaagatgagtattatct |
410 |
Q |
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| T |
17107457 |
ttcgagaactctctagatttttgaatgcatgtttggaaaacaagtcccatgcatgttcttcttctaatttttgtagaagatgagtatgatct |
17107366 |
T |
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