View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_2 (Length: 689)
Name: NF18077_low_2
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Complemental strand, 12953086 - 12952423
Alignment:
| Q |
19 |
gaatggtggaaggaggaattttgtgaagagctttcgaagaagagtaggaagaaaaagagaagccttgattgtcgcggcaatggaggggaatcgtggtggc |
118 |
Q |
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| T |
12953086 |
gaatggtggaaggaggaattttgtgaagagctttcgaagaagagtaggaagaaaaagagaagccttgattgtcgcggcaatggaggggaatcgtggtggc |
12952987 |
T |
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| Q |
119 |
agagagacgaggatgtaggcggcgcagcagtagagaaaaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggtttaag |
218 |
Q |
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| T |
12952986 |
agagagacaaggatgtaggcggcccaccattagagaagaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggtttaag |
12952887 |
T |
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| Q |
219 |
cggcgagcttaggactaacgcaaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaataagtagcacaccgagtatgagagga |
318 |
Q |
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| T |
12952886 |
cggcgagcttaggactaacggaaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaataagtagcacaccgagtatgagagga |
12952787 |
T |
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| Q |
319 |
actgtttgttacattgctcctgaatacggcagtggtggtcaattatccgagaaatgtgatgtgtatagtttcggtgttctgcttttggttctggttgctg |
418 |
Q |
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| T |
12952786 |
actgtttgttacattgctcctgaatacggtggtggtggtcaattatccgagaaatgtgatgtgtatagtttcggtgttctgcttttggttctggttgctg |
12952687 |
T |
|
| Q |
419 |
gaagaagaccattacaagtaacagcatcaccgatttcagaattcgagagagcaaatctaatttcatgggctagacaacttgctcataatggaaaactctt |
518 |
Q |
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| T |
12952686 |
gaagaagaccattacaagtaacagcatcaccgatttcagaattcgagagagcaaatctaatttcatgggctagacaacttgctcataatggaaaactctt |
12952587 |
T |
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| Q |
519 |
ggatcttgttgatagttctatacattctttggataaagaacaagcattgctatgtatcaccattgcattgctatgtttgcagagatctcctgggaaaagg |
618 |
Q |
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| T |
12952586 |
ggatcttgttgatagttctatacattctttggataaagaacaagcattgctatgtatcaccattgcattgctatgtttgcagagatctcctgggaaaagg |
12952487 |
T |
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| Q |
619 |
ccttccatgaaggagattgtagggatgctttctggtgaagctgacccacctcacttgccctttg |
682 |
Q |
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| T |
12952486 |
ccttccatgaaggagattgtagggatgctttctggtgaagctgacccacctcacttgccctttg |
12952423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 46223338 - 46223400
Alignment:
| Q |
280 |
aagagtggtggaataagtagcacaccgagtatgagaggaactgtttgttacattgctcctgaa |
342 |
Q |
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| T |
46223338 |
aagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaa |
46223400 |
T |
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