View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_low_20 (Length: 393)
Name: NF18077_low_20
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 45293394 - 45293006
Alignment:
| Q |
1 |
gacatgtaccattttcccatcttctacatgatgtgtnnnnnnnttgtgacactgtacaccaaatggaacttaaatgctctatgtgaggcacaataaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293394 |
gacatgtaccattttcccatcttctacatgatgtgtaaaaaaattgtgacaatgtacaccaaatggaacttaaatgctctatgtgaggcacaataaaact |
45293295 |
T |
|
| Q |
101 |
ttaagactaatttgatataattaaataacttgaaataccgcaagatgtattttgcctataa-tttacataaagagttaaggagaataagagattaccaaa |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
45293294 |
ttaagacaaatttgatataattaaataacttgaaataccgcaagatgtattttgcctataaatttacatacagaattaaggataataagagattaccaaa |
45293195 |
T |
|
| Q |
200 |
ctaacaacttccacttcacactcactgctatctgaattgttagcctcagaagtactatccattgattgctcattattaccacctcccatcatgaatctaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293194 |
ctaacaacttccacttcacactcactgctatctgaattgttagcctcagaagtactatccattgattgctcattattaccacctcccatcatgaatctaa |
45293095 |
T |
|
| Q |
300 |
acccaactttctgcaatccaaactcagcaaactgcaatagaggcatccttttatgatcatgtccctttattttcttctcctatgcttct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45293094 |
acccaactttctgcaatccaaactcagcaaactgcaatagaggcatccttttatgatcatgtccctttattttcttctccaatgcttct |
45293006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University