View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_low_22 (Length: 386)
Name: NF18077_low_22
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 46553098 - 46552855
Alignment:
| Q |
12 |
tgagaagaagaaatagagaatgctcttgttttcagcataggaaccaattggattagccactcaagtggcatttgaacagaaggaaaatctttgagcacct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46553098 |
tgagaagaagaaatagagaatgctcttgttttcagcataggaaccaattggattagccactcaagtggcatttgaacagaaggaaaatcttcgagcacct |
46552999 |
T |
|
| Q |
112 |
tttttaccgcaaaaaataaaacaaatatatgcatgaaattgatttaatgaaactgacaagaaaatgaaagcatataatcaaggactatctaaacaagcaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552998 |
tttttaccgcaaaaaataaaacaaatatatgcatgaaattgatttaatgaaactgacaagaaaatgaaagcatataatcaaggactatctaaacaagcaa |
46552899 |
T |
|
| Q |
212 |
gaaaacaagcatagaatgtcacaaattatggcttcaaaatatat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552898 |
gaaaacaagcatagaatgtcacaaattatggcttcaaaatatat |
46552855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 46552821 - 46552704
Alignment:
| Q |
251 |
tatatcataaatattttctacaaagtacgaagttgcttaacatcttagtaagaaaagagtccaaaatcagttagataaagacttcaatgcataaaaaact |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552821 |
tatatcataaatattttctacaaagtacgaagttgcttaacatcttagtaagaaaagagtccaaaatcagttagataaagacttcaatgcataaaaaact |
46552722 |
T |
|
| Q |
351 |
agtgaattgattcaaagc |
368 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46552721 |
agtgaattgattcaaagc |
46552704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 1029518 - 1029274
Alignment:
| Q |
12 |
tgagaagaagaaatagagaatgctcttgttttcagcataggaaccaattggattagccactcaagtggcatttgaacagaaggaaaatctttgagcacct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1029518 |
tgagaagaagaaatagagaatgctcttgttttcagcataggaaccaattggattagccactcaagtggcatttgaacagaaggaaaatcttcgagcacct |
1029419 |
T |
|
| Q |
112 |
tttttaccgcaaaaaataaaacaaatatatgcatgaaattgatttaatgaaactgacaagaaaatgaaagc-atataatcaaggactatctaaacaagca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1029418 |
tttttaccgcaaaaaataaaacaaatatatgcataaaattgatttaatgaaactgacaagaaaatgaaagcaatataatcaaggactatctaaacaagca |
1029319 |
T |
|
| Q |
211 |
agaaaacaagcatagaatgtcacaaattatggcttcaaaatatat |
255 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1029318 |
agaaaacgagcatagaatgtcacagattatggcttcaaaatatat |
1029274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 243 - 368
Target Start/End: Complemental strand, 1029235 - 1029110
Alignment:
| Q |
243 |
cttcaaaatatatcataaatattttctacaaagtacgaagttgcttaacatcttagtaagaaaagagtccaaaatcagttagataaagacttcaatgcat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029235 |
cttcaaaatatatcataaatattttctacaaagtttgaagttgcttaacatcttagtaagaaaagagtccaaaatcagttagataaagacttcaatgcat |
1029136 |
T |
|
| Q |
343 |
aaaaaactagtgaattgattcaaagc |
368 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1029135 |
aaaaaactagtgaattgattcaaagc |
1029110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 40832037 - 40831833
Alignment:
| Q |
12 |
tgagaagaagaaatagagaatgctcttgttttcagcataggaaccaattggattagccactcaagtggcatttgaacagaaggaaaatctttgagcacct |
111 |
Q |
| |
|
||||||||||| || |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| |
|
|
| T |
40832037 |
tgagaagaagatatggagaattctctcttttttagcataggaaccaattggattagccactcaagtggcatttgtacagaaggaaaatccttcagtacct |
40831938 |
T |
|
| Q |
112 |
ttttt-accgcaaaaaataaaacaaatatatgcatgaaattgatttaatgaaactgacaagaaaatgaaagcatataatcaaggactatctaaacaagca |
210 |
Q |
| |
|
||||| ||| |||||| | |||| ||||||||| ||||||||||||||| || | |||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
40831937 |
tttttaacccaaaaaaacagaacatgtatatgcataaaattgatttaatgatacaaagaagaaaatgaaagcatataatcaacgaatatctaaacagaca |
40831838 |
T |
|
| Q |
211 |
agaaa |
215 |
Q |
| |
|
||||| |
|
|
| T |
40831837 |
agaaa |
40831833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University